RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 MTHFD1P11586 935 aaKnown RBP5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 ALAS1P13196 640 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 HPDP32754 393 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 SLC6A9P48067 706 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 VAV2P52735 878 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 HSD17B7P56937 341 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 G3BP1Q13283 466 aaKnown RBP eCLIP5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 TRIM14Q14142 442 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 STAT4Q14765 748 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 AKNAD1Q5T1N1 836 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 MFSD4BQ5TF39 518 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 CCBE1Q6UXH8 406 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 SEM1Q6ZVN7 128 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 EPM2AIP1Q7L775 607 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 GLCCI1Q86VQ1 547 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 COLGALT2Q8IYK4 626 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 FITM2Q8N6M3 262 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 TBC1D15Q8TC07 691 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 SSH3Q8TE77 659 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 CASKIN2Q8WXE0 1202 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 CCT6BQ92526 530 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 AHCYL2Q96HN2 611 aaKnown RBP5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 ORAI2Q96SN7 254 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 NAA15Q9BXJ9 866 aaKnown RBP5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 TCF7L1Q9HCS4 588 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 HELLSQ9NRZ9 838 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 SEMA4GQ9NTN9 838 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 CCM2LQ9NUG4 571 aaPredicted RBP5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 HSFX1Q9UBD0 423 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 GIMAP2Q9UG22 337 aa5.43□□□□□ -1.54
CCDC88A-210ENST00000468534 TRGV11A0A075B6L2 103 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 MYADML2A6NDP7 307 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 BOLA2-SMG1P6H3BVE0 249 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 M0R3H8 397 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 NCAM2O15394 837 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 BRINP1O60477 761 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 SKAP2O75563 359 aaPredicted RBP5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 TIPRLO75663 272 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 BBOX1O75936 387 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 GRK6P43250 576 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 GPR3P46089 330 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 PAPOLAP51003 745 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 SLC5A3P53794 718 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 CACNA2D1P54289 1103 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 COX10Q12887 443 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 PLCB4Q15147 1175 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 PDCD2Q16342 344 aaPredicted RBP5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 ANO4Q32M45 955 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 GPATCH4Q5T3I0 446 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 SYDE2Q5VT97 1194 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 C4orf50Q6ZRC1 276 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 SPATS2Q86XZ4 545 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 MYLK4Q86YV6 388 aaPredicted RBP5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 ZGPATQ8N5A5 531 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 OR2I1PQ8NGU4 316 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 FUBP1Q96AE4 644 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 HIC2Q96JB3 615 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 SLC2A13Q96QE2 648 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 HEPHQ9BQS7 1158 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 NUDT16L1Q9BRJ7 211 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 UNC45AQ9H3U1 944 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 ANLNQ9NQW6 1124 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 UTP6Q9NYH9 597 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 FNIP2Q9P278 1114 aa5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 HERC5Q9UII4 1024 aaKnown RBP5.42□□□□□ -1.54
CCDC88A-210ENST00000468534 hCG_1642624A0A1W2PR95 340 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 EYA2O00167 538 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 AREL1O15033 823 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 PEX1O43933 1283 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 C1QL1O75973 258 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 AMY1AP04745 511 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 NEFHP12036 1026 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 ZKSCAN1P17029 563 aaPredicted RBP5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 LPOP22079 712 aaPredicted RBP5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 IL4RP24394 825 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 CREMQ03060 361 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 MGAT2Q10469 447 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 MTM1Q13496 603 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 SF3B3Q15393 1217 aaKnown RBP5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 ARHGAP29Q52LW3 1261 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 HECTD3Q5T447 861 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 ABRAXAS1Q6UWZ7 409 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 CNTD1Q8N815 330 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 NSUN6Q8TEA1 469 aaKnown RBP5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 HDAC2Q92769 488 aaKnown RBP5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 DPF2Q92785 391 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 RAB24Q969Q5 203 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 SYAP1Q96A49 352 aaPredicted RBP5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 JAKMIP2Q96AA8 810 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 PDLIM2Q96JY6 352 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 UROC1Q96N76 676 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 PNKPQ96T60 521 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 CRB3Q9BUF7 120 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 LMAN2LQ9H0V9 348 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 ELAC1Q9H777 363 aaKnown RBP5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 ARGLU1Q9NWB6 273 aaPredicted RBP5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 PIH1D1Q9NWS0 290 aaKnown RBP5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 FAM30AQ9NZY2 134 aa5.41□□□□□ -1.54
CCDC88A-210ENST00000468534 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms