RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 BBS9Q3SYG4 887 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 MSS51Q4VC12 460 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 SCARA3Q6AZY7 606 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 MPZL3Q6UWV2 235 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 ANKRD23Q86SG2 305 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 LONP2Q86WA8 852 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 CHSY1Q86X52 802 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 ARFGAP1Q8N6T3 406 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 TCP10LQ8TDR4 215 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 TBC1D10AQ9BXI6 508 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 TRIM55Q9BYV6 548 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 FRMD8Q9BZ67 464 aaPredicted RBP11.82□□□□□ -0.52
USP4-205ENST00000431357 SYNCQ9H7C4 482 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 MANSC1Q9H8J5 431 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 ASNSD1Q9NWL6 643 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 IKBKGQ9Y6K9 419 aa11.82□□□□□ -0.52
USP4-205ENST00000431357 TTLL13PA6NNM8 815 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 BANF1O75531 89 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 IL1BP01584 269 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 PROZP22891 400 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 ADRA1DP25100 572 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 PCK1P35558 622 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 GABRB2P47870 512 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 LAMTOR4Q0VGL1 99 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 TAF1BQ53T94 588 aaPredicted RBP11.81□□□□□ -0.52
USP4-205ENST00000431357 ZNF667Q5HYK9 610 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 ANKRD20A2Q5SQ80 823 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 ANKRD20A1Q5TYW2 823 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 ANKRD20A3Q5VUR7 823 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 SCARA5Q6ZMJ2 495 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 TSHZ1Q6ZSZ6 1077 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 XYLT1Q86Y38 959 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 UNC45BQ8IWX7 931 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 MICALL2Q8IY33 904 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 ZNF276Q8N554 614 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 ENDOVQ8N8Q3 282 aaKnown RBP11.81□□□□□ -0.52
USP4-205ENST00000431357 FAM13CQ8NE31 585 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 STK32AQ8WU08 396 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 BCO2Q9BYV7 579 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 NPHS2Q9NP85 383 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 PIM2Q9P1W9 311 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 SAE1Q9UBE0 346 aaPredicted RBP11.81□□□□□ -0.52
USP4-205ENST00000431357 MTO1Q9Y2Z2 717 aaKnown RBP11.81□□□□□ -0.52
USP4-205ENST00000431357 LOC285556D6RIA3 1793 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 ACKR2O00590 384 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 TRUB2O95900 331 aaKnown RBP11.81□□□□□ -0.52
USP4-205ENST00000431357 RBP3P10745 1247 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 GNAZP19086 355 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 EDNRBP24530 442 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 SLC18A2Q05940 514 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 TFDP2Q14188 446 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 EFTUD2Q15029 972 aaKnown RBP eCLIP11.81□□□□□ -0.52
USP4-205ENST00000431357 RBBP5Q15291 538 aaKnown RBP11.81□□□□□ -0.52
USP4-205ENST00000431357 SMTNL2Q2TAL5 461 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 CMPK2Q5EBM0 449 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 FAM47CQ5HY64 1035 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 KCNT1Q5JUK3 1230 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 NAIF1Q69YI7 327 aaPredicted RBP11.81□□□□□ -0.52
USP4-205ENST00000431357 METTL7BQ6UX53 244 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 SAMD7Q7Z3H4 446 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 APOBEC3FQ8IUX4 373 aaKnown RBP11.81□□□□□ -0.52
USP4-205ENST00000431357 SLC4A11Q8NBS3 891 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 MCRS1Q96EZ8 462 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 ZNF570Q96NI8 536 aa11.81□□□□□ -0.52
USP4-205ENST00000431357 METTL5Q9NRN9 209 aaKnown RBP11.81□□□□□ -0.52
USP4-205ENST00000431357 IGKV6-21A0A0C4DH24 114 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 LPXNO60711 386 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 DNAJC6O75061 913 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 PEX11AO75192 247 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 FAM155BO75949 473 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 TMEM63AO94886 807 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 DHRS4L1P0CG22 281 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 SRGAP2CP0DJJ0 459 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 MARK3P27448 753 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 MIPP30301 263 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 TCF7P36402 384 aaPredicted RBP11.8□□□□□ -0.52
USP4-205ENST00000431357 RAD23BP54727 409 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 BASP1P80723 227 aaKnown RBP11.8□□□□□ -0.52
USP4-205ENST00000431357 ZNF200P98182 395 aaPredicted RBP11.8□□□□□ -0.52
USP4-205ENST00000431357 ROR1Q01973 937 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 CNTN2Q02246 1040 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 GAD2Q05329 585 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 SH3D19Q5HYK7 790 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 NOL9Q5SY16 702 aaKnown RBP11.8□□□□□ -0.52
USP4-205ENST00000431357 ZNF449Q6P9G9 518 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 BZW1Q7L1Q6 419 aaKnown RBP11.8□□□□□ -0.52
USP4-205ENST00000431357 CLNKQ7Z7G1 428 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 KIAA0319LQ8IZA0 1049 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 TEX9Q8N6V9 391 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 RNF149Q8NC42 400 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 SLC44A1Q8WWI5 657 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 APBB2Q92870 758 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 APOPT1Q96IL0 206 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 CAMKK2Q96RR4 588 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 WDR83Q9BRX9 315 aaKnown RBP11.8□□□□□ -0.52
USP4-205ENST00000431357 TSSK1BQ9BXA7 367 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 MIS12Q9H081 205 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 CYP3A43Q9HB55 503 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 PTPRHQ9HD43 1115 aa11.8□□□□□ -0.52
USP4-205ENST00000431357 PNPLA8Q9NP80 782 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms