RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ORC1Q13415 861 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 GRIN2CQ14957 1233 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 HABP4Q5JVS0 413 aaKnown RBP14.2□□□□□ -0.14
LIMS1-204ENST00000409441 PLPP4Q5VZY2 271 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 ACOT1Q86TX2 421 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 LRRTM3Q86VH5 581 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 CRYBG2Q8N1P7 616 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 OLIG1Q8TAK6 271 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 TMEM176AQ96HP8 235 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 PBKQ96KB5 322 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 TMEM209Q96SK2 561 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 DPEP3Q9H4B8 488 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 PRDM12Q9H4Q4 367 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 RXFP1Q9HBX9 757 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.2□□□□□ -0.14
LIMS1-204ENST00000409441 CDH9Q9ULB4 789 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 CDY1Q9Y6F8 540 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 NLRC5Q86WI3 1866 aa14.2□□□□□ -0.14
LIMS1-204ENST00000409441 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.19□□□□□ -0.14
LIMS1-204ENST00000409441 ADAM12O43184 909 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 CNPP09543 421 aaKnown RBP14.19□□□□□ -0.14
LIMS1-204ENST00000409441 PTPN1P18031 435 aaKnown RBP14.19□□□□□ -0.14
LIMS1-204ENST00000409441 TNFAIP3P21580 790 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 OR1D2P34982 312 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 NOP2P46087 812 aaKnown RBP14.19□□□□□ -0.14
LIMS1-204ENST00000409441 RPS6KA1Q15418 735 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 PTPROQ16827 1216 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 ZNF697Q5TEC3 545 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 SLFN11Q7Z7L1 901 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 FAM71AQ8IYT1 594 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 LRRC57Q8N9N7 239 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 SLC4A11Q8NBS3 891 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 RBBP8NLQ8NC74 664 aaPredicted RBP14.19□□□□□ -0.14
LIMS1-204ENST00000409441 TPCN2Q8NHX9 752 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 TNIP3Q96KP6 325 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 HEXIM2Q96MH2 286 aaKnown RBP14.19□□□□□ -0.14
LIMS1-204ENST00000409441 LPIN3Q9BQK8 851 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 SYT15Q9BQS2 421 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 DNAI2Q9GZS0 605 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 ZCWPW1Q9H0M4 648 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 VIPAS39Q9H9C1 493 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 FNIP2Q9P278 1114 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 GTF3C4Q9UKN8 822 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 MYBPHLA2RUH7 354 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 TEX28O15482 410 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 CYP26A1O43174 497 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 FTCDO95954 541 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 OR4Q2P0C623 313 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 GALCP54803 685 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 PSMC1P62191 440 aaKnown RBP14.19□□□□□ -0.14
LIMS1-204ENST00000409441 TSPY1Q01534 308 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 CREMQ03060 361 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 INTS6LQ5JSJ4 861 aaKnown RBP14.19□□□□□ -0.14
LIMS1-204ENST00000409441 SMYD5Q6GMV2 418 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 SLC8B1Q6J4K2 584 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 FAM171BQ6P995 826 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 GLYCTKQ8IVS8 523 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 B3GALNT2Q8NCR0 500 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 MRPL38Q96DV4 380 aaKnown RBP14.19□□□□□ -0.14
LIMS1-204ENST00000409441 FAM161BQ96MY7 647 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 KLHL5Q96PQ7 755 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 AGPAT1Q99943 283 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 EMILIN2Q9BXX0 1053 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 CRTAC1Q9NQ79 661 aa14.19□□□□□ -0.14
LIMS1-204ENST00000409441 PLXNA4Q9HCM2 1894 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 CHD7Q9P2D1 2997 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 PAEPP09466 180 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 TNFRSF8P28908 595 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 CXCR5P32302 372 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 NDUFV1P49821 464 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 CDR1P51861 262 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 ZNF132P52740 706 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 GPR17Q13304 367 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 RAB33AQ14088 237 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 CASP8Q14790 479 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 CCNI2Q6ZMN8 369 aaPredicted RBP14.18□□□□□ -0.14
LIMS1-204ENST00000409441 PALB2Q86YC2 1186 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 DCP1BQ8IZD4 617 aaKnown RBP14.18□□□□□ -0.14
LIMS1-204ENST00000409441 C12orf29Q8N999 325 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 MYCBPAPQ8TBZ2 947 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 UBE2Q2Q8WVN8 375 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 CTNNBL1Q8WYA6 563 aaPredicted RBP14.18□□□□□ -0.14
LIMS1-204ENST00000409441 RFFLQ8WZ73 363 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 PKMYT1Q99640 499 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 SELENOOQ9BVL4 669 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 ACP6Q9NPH0 428 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 TMLHEQ9NVH6 421 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 KIAA1257Q9ULG3 409 aa14.18□□□□□ -0.14
LIMS1-204ENST00000409441 VWA8A3KMH1 1905 aa14.17□□□□□ -0.14
LIMS1-204ENST00000409441 ANKRD62A6NC57 917 aa14.17□□□□□ -0.14
LIMS1-204ENST00000409441 CALCAP01258 141 aa14.17□□□□□ -0.14
LIMS1-204ENST00000409441 CPB1P15086 417 aa14.17□□□□□ -0.14
LIMS1-204ENST00000409441 KLRC2P26717 231 aa14.17□□□□□ -0.14
LIMS1-204ENST00000409441 BPIFB4P59827 614 aa14.17□□□□□ -0.14
LIMS1-204ENST00000409441 TCEAL1Q15170 157 aa14.17□□□□□ -0.14
LIMS1-204ENST00000409441 CCDC142Q17RM4 750 aa14.17□□□□□ -0.14
LIMS1-204ENST00000409441 SLC39A12Q504Y0 691 aa14.17□□□□□ -0.14
LIMS1-204ENST00000409441 MDH1BQ5I0G3 518 aa14.17□□□□□ -0.14
LIMS1-204ENST00000409441 ZNF461Q8TAF7 563 aa14.17□□□□□ -0.14
LIMS1-204ENST00000409441 PSMB7Q99436 277 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms