RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 FAM136AQ96C01 138 aa10.45□□□□□ -0.74
COL17A1-203ENST00000393211 ZBTB45Q96K62 511 aaPredicted RBP10.45□□□□□ -0.74
COL17A1-203ENST00000393211 FAM84AQ96KN4 292 aa10.45□□□□□ -0.74
COL17A1-203ENST00000393211 C7orf26Q96N11 449 aa10.45□□□□□ -0.74
COL17A1-203ENST00000393211 TMEM120AQ9BXJ8 343 aa10.45□□□□□ -0.74
COL17A1-203ENST00000393211 ZNF302Q9NR11 478 aa10.45□□□□□ -0.74
COL17A1-203ENST00000393211 ARL8BQ9NVJ2 186 aa10.45□□□□□ -0.74
COL17A1-203ENST00000393211 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.45□□□□□ -0.74
COL17A1-203ENST00000393211 STX18Q9P2W9 335 aaKnown RBP10.45□□□□□ -0.74
COL17A1-203ENST00000393211 DNAJB4Q9UDY4 337 aa10.45□□□□□ -0.74
COL17A1-203ENST00000393211 FBXO40Q9UH90 709 aa10.45□□□□□ -0.74
COL17A1-203ENST00000393211 DCTN4Q9UJW0 460 aa10.45□□□□□ -0.74
COL17A1-203ENST00000393211 ADAMTS5Q9UNA0 930 aa10.45□□□□□ -0.74
COL17A1-203ENST00000393211 IGKV6D-21A0A0A0MT36 114 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 A0A0G2JND7 137 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 CFAP69A5D8W1 941 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 GOLGA8SH3BPF8 625 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 GOLGA8MH3BSY2 632 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 TOM1L1O75674 476 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 RAD17O75943 681 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 PSMG1O95456 288 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 RARBP10826 455 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 NEFHP12036 1026 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 CCNHP51946 323 aaPredicted RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 GDF10P55107 478 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 EIF3EP60228 445 aaKnown RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 AP1B1Q10567 949 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 TRPC3Q13507 836 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 TFDP2Q14188 446 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 EFTUD2Q15029 972 aaKnown RBP eCLIP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 KHDC1Q4VXA5 237 aaKnown RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 FAM47CQ5HY64 1035 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 TTC39BQ5VTQ0 682 aaPredicted RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 ATG16L1Q676U5 607 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 TRIM68Q6AZZ1 485 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 SLC26A11Q86WA9 606 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 EXOC8Q8IYI6 725 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 SLC4A11Q8NBS3 891 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 REPS2Q8NFH8 660 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 TMEM143Q96AN5 459 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 HAUS1Q96CS2 278 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 MRRFQ96E11 262 aaKnown RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 OXNAD1Q96HP4 312 aaPredicted RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 WDR83Q9BRX9 315 aaKnown RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 FAM167BQ9BTA0 163 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 MRPL4Q9BYD3 311 aaKnown RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 NRBP2Q9NSY0 501 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 NMRK1Q9NWW6 199 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 SLC17A7Q9P2U7 560 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 TEX264Q9Y6I9 313 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 FER1L6Q2WGJ9 1857 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 DOCK5Q9H7D0 1870 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 OGTO15294 1046 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 GAS2O43903 313 aaKnown RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 FAM189A1O60320 539 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 BANF1O75531 89 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 KRT37O76014 449 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 RNF8O76064 485 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 TMEM63AO94886 807 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 ENDOD1O94919 500 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 CST3P01034 146 aaPredicted RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 SERPINB3P29508 390 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 SSTR3P32745 418 aaPredicted RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 RFC1P35251 1148 aaPredicted RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 SERPINB4P48594 390 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 MYL6P60660 151 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 ROR1Q01973 937 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 KCNJ11Q14654 390 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 TARBP2Q15633 366 aaKnown RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 GSTA3Q16772 222 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 ZBTB41Q5SVQ8 909 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 ANGEL2Q5VTE6 544 aaKnown RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 SNX30Q5VWJ9 437 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 LRRC6Q86X45 466 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 TMPRSS6Q8IU80 811 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 UNC45BQ8IWX7 931 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 ARFGAP1Q8N6T3 406 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 KCTD6Q8NC69 237 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 CCDC110Q8TBZ0 833 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 ZNF483Q8TF39 744 aaPredicted RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 STMN2Q93045 179 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 LRRC39Q96DD0 335 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 RTP4Q96DX8 246 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 MTBPQ96DY7 904 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 SH3GL3Q99963 347 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 SIKE1Q9BRV8 207 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 CCDC28BQ9BUN5 200 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 IQCGQ9H095 443 aaKnown RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 QTRT2Q9H974 415 aaKnown RBP10.44□□□□□ -0.74
COL17A1-203ENST00000393211 AS3MTQ9HBK9 375 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 ASNSD1Q9NWL6 643 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 TAS2R1Q9NYW7 299 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 PAK5Q9P286 719 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 ANGPTL2Q9UKU9 493 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 SORCS3Q9UPU3 1222 aa10.44□□□□□ -0.74
COL17A1-203ENST00000393211 TCRBV9S1A1TA0A576 114 aa10.43□□□□□ -0.74
COL17A1-203ENST00000393211 WDR91A4D1P6 747 aa10.43□□□□□ -0.74
COL17A1-203ENST00000393211 DPPA5A6NC42 116 aa10.43□□□□□ -0.74
COL17A1-203ENST00000393211 I3L4J1 428 aa10.43□□□□□ -0.74
COL17A1-203ENST00000393211 WNT10BO00744 389 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms