RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 GLIS1Q8NBF1 620 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 MRPL45Q9BRJ2 306 aaKnown RBP11.35□□□□□ -0.59
NEDD9-201ENST00000379433 UBXN6Q9BZV1 441 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 DPEP3Q9H4B8 488 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 SLITRK6Q9H5Y7 841 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 SLC5A4Q9NY91 659 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 TMEM98Q9Y2Y6 226 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 ASAP2O43150 1006 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 ELNP15502 786 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 MMP8P22894 467 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 AFF1P51825 1210 aaKnown RBP11.35□□□□□ -0.59
NEDD9-201ENST00000379433 RAD23BP54727 409 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 PTPN11Q06124 597 aaPredicted RBP11.35□□□□□ -0.59
NEDD9-201ENST00000379433 IFRD2Q12894 506 aaPredicted RBP11.35□□□□□ -0.59
NEDD9-201ENST00000379433 MAP2K5Q13163 448 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 NEK10Q6ZWH5 1172 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 CCDC80Q76M96 950 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 RHOT1Q8IXI2 618 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 MGARPQ8TDB4 240 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 WHAMMQ8TF30 809 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 SELENOSQ9BQE4 189 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 TMEM121Q9BTD3 319 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 DDX23Q9BUQ8 820 aaKnown RBP11.35□□□□□ -0.59
NEDD9-201ENST00000379433 TRIP11Q15643 1979 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 A8MXQ7 604 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 PMM2O15305 246 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 MICAL2O94851 1124 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 ERBB2P04626 1255 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 LCP1P13796 627 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 CUL1Q13616 776 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 PPP6R3Q5H9R7 873 aaPredicted RBP11.35□□□□□ -0.59
NEDD9-201ENST00000379433 ZC3H18Q86VM9 953 aaKnown RBP11.35□□□□□ -0.59
NEDD9-201ENST00000379433 ARMC2Q8NEN0 867 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 CD101Q93033 1021 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 C9orf72Q96LT7 481 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 KATNBL1Q9H079 304 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 TSPAN16Q9UKR8 245 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 ARID2Q68CP9 1835 aa11.35□□□□□ -0.59
NEDD9-201ENST00000379433 E5RJQ4 531 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 I3L4J1 428 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 SGK1O00141 431 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 ZSCAN9O15535 394 aaPredicted RBP11.34□□□□□ -0.59
NEDD9-201ENST00000379433 ITGBL1O95965 494 aaPredicted RBP11.34□□□□□ -0.59
NEDD9-201ENST00000379433 CCDC130P13994 396 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 NUMBP49757 651 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 MPP3Q13368 585 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 PLPP6Q8IY26 295 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 SLC4A11Q8NBS3 891 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 MDM1Q8TC05 714 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 KAT2BQ92831 832 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 LRRC45Q96CN5 670 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 DDX27Q96GQ7 796 aaKnown RBP11.34□□□□□ -0.59
NEDD9-201ENST00000379433 TMEM176AQ96HP8 235 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 INPP5FQ9Y2H2 1132 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 SCINQ9Y6U3 715 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 B4GALT4O60513 344 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 HOXA11P31270 313 aaPredicted RBP11.34□□□□□ -0.59
NEDD9-201ENST00000379433 CHRNA3P32297 505 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 MAGEA10P43363 369 aaPredicted RBP11.34□□□□□ -0.59
NEDD9-201ENST00000379433 MNAT1P51948 309 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 SEC24CP53992 1094 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 DMPKQ09013 629 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 MMRN1Q13201 1228 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 CHADLQ6NUI6 762 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 TMC3Q7Z5M5 1100 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 KIAA1958Q8N8K9 716 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 MAGEB5Q9BZ81 275 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 DNPEPQ9ULA0 475 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 PASKQ96RG2 1323 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 PROZP22891 400 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 EIF4BP23588 611 aaKnown RBP11.34□□□□□ -0.59
NEDD9-201ENST00000379433 LMO2P25791 158 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 CHKAP35790 457 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 MAGOHP61326 146 aaKnown RBP11.34□□□□□ -0.59
NEDD9-201ENST00000379433 ZNF252P-AS1Q0IIN9 211 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 GOLGA7BQ2TAP0 167 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 PPP1R26Q5T8A7 1209 aaPredicted RBP11.34□□□□□ -0.59
NEDD9-201ENST00000379433 ZNF677Q86XU0 584 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 LSM14AQ8ND56 463 aaKnown RBP11.34□□□□□ -0.59
NEDD9-201ENST00000379433 ZNF483Q8TF39 744 aaPredicted RBP11.34□□□□□ -0.59
NEDD9-201ENST00000379433 FAM149B1Q96BN6 582 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 RSRC1Q96IZ7 334 aaKnown RBP11.34□□□□□ -0.59
NEDD9-201ENST00000379433 CFAP57Q96MR6 1250 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 VIPAS39Q9H9C1 493 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 FAM114A2Q9NRY5 505 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 GABRQQ9UN88 632 aa11.34□□□□□ -0.59
NEDD9-201ENST00000379433 HGSO14964 777 aaPredicted RBP11.33□□□□□ -0.6
NEDD9-201ENST00000379433 BANF1O75531 89 aa11.33□□□□□ -0.6
NEDD9-201ENST00000379433 CLCN2P51788 898 aa11.33□□□□□ -0.6
NEDD9-201ENST00000379433 ATXN1P54253 815 aaKnown RBP11.33□□□□□ -0.6
NEDD9-201ENST00000379433 SURF1Q15526 300 aa11.33□□□□□ -0.6
NEDD9-201ENST00000379433 FSCN1Q16658 493 aaKnown RBP11.33□□□□□ -0.6
NEDD9-201ENST00000379433 KYNUQ16719 465 aa11.33□□□□□ -0.6
NEDD9-201ENST00000379433 SLC5A9Q2M3M2 681 aa11.33□□□□□ -0.6
NEDD9-201ENST00000379433 DENND2CQ68D51 928 aa11.33□□□□□ -0.6
NEDD9-201ENST00000379433 IQSEC1Q6DN90 963 aa11.33□□□□□ -0.6
NEDD9-201ENST00000379433 CTU1Q7Z7A3 348 aaKnown RBP11.33□□□□□ -0.6
NEDD9-201ENST00000379433 PACS2Q86VP3 889 aa11.33□□□□□ -0.6
NEDD9-201ENST00000379433 NT5DC4Q86YG4 428 aa11.33□□□□□ -0.6
NEDD9-201ENST00000379433 KCTD6Q8NC69 237 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms