RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 CHKBQ9Y259 395 aa20.45■□□□□ 0.86
SHROOM1-202ENST00000378676 STK38LQ9Y2H1 464 aa20.45■□□□□ 0.86
SHROOM1-202ENST00000378676 ITGB3P05106 788 aa20.45■□□□□ 0.86
SHROOM1-202ENST00000378676 PTPN11Q06124 597 aaPredicted RBP20.45■□□□□ 0.86
SHROOM1-202ENST00000378676 LVRNQ6Q4G3 990 aa20.45■□□□□ 0.86
SHROOM1-202ENST00000378676 FBXO16Q8IX29 292 aaPredicted RBP20.45■□□□□ 0.86
SHROOM1-202ENST00000378676 TTC13Q8NBP0 860 aa20.45■□□□□ 0.86
SHROOM1-202ENST00000378676 FBF1Q8TES7 1133 aa20.45■□□□□ 0.86
SHROOM1-202ENST00000378676 MZB1Q8WU39 189 aa20.45■□□□□ 0.86
SHROOM1-202ENST00000378676 PAFAH2Q99487 392 aa20.45■□□□□ 0.86
SHROOM1-202ENST00000378676 RPF1Q9H9Y2 349 aaKnown RBP20.45■□□□□ 0.86
SHROOM1-202ENST00000378676 E7ESA3 106 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 NDC80O14777 642 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 CSDE1O75534 798 aaKnown RBP20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 KRT4P19013 534 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 ACCSLQ4AC99 568 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 NPNTQ6UXI9 565 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 FAM71DQ8N9W8 422 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 LRRC8CQ8TDW0 803 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 STAMBPL1Q96FJ0 436 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 DHRS4Q9BTZ2 278 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 L3MBTL1Q9Y468 752 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 LACTBL1A8MY62 500 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 M0QYV0 167 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 EZRP15311 586 aaKnown RBP20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 EIF3EP60228 445 aaKnown RBP20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 MMRN1Q13201 1228 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 BBS9Q3SYG4 887 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 JADE1Q6IE81 842 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 EFCAB12Q6NXP0 572 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 PLPPR4Q7Z2D5 763 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 KCTD6Q8NC69 237 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 CXorf38Q8TB03 319 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 ERP27Q96DN0 273 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 SPATA33Q96N06 139 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 C12orf65Q9H3J6 166 aaKnown RBP20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 ACSS3Q9H6R3 686 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 PPCSQ9HAB8 311 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 XPO7Q9UIA9 1087 aaKnown RBP20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 KAT6AQ92794 2004 aa20.44■□□□□ 0.86
SHROOM1-202ENST00000378676 UNC5CO95185 931 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 TRUB2O95900 331 aaKnown RBP20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 SH3PXD2AQ5TCZ1 1133 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 HHATQ5VTY9 493 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 TRNP1Q6NT89 227 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 C10orf82Q8WW14 230 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 MCRS1Q96EZ8 462 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 PPP1R16BQ96T49 567 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 CALN1Q9BXU9 219 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 FRMD8P1Q9BZ68 369 aaPredicted RBP20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 PHACTR1Q9C0D0 580 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 ASCC2Q9H1I8 757 aaPredicted RBP20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 WDR35Q9P2L0 1181 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 TNFSF13BQ9Y275 285 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 PLXNA1Q9UIW2 1896 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 APOC4-APOC2K7ER74 178 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 PIK3R2O00459 728 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 CILPO75339 1184 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 IL18RAPO95256 599 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 APOC2P02655 101 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 ADRA1DP25100 572 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 PHBP35232 272 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 YARSP54577 528 aaKnown RBP20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 ADGRD1Q6QNK2 874 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 C3orf62Q6ZUJ4 267 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 CMASQ8NFW8 434 aaPredicted RBP20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 DCAKDQ8WVC6 231 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 KLF6Q99612 283 aaPredicted RBP20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 USP18Q9UMW8 372 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 USH1CQ9Y6N9 552 aa20.43■□□□□ 0.86
SHROOM1-202ENST00000378676 SKIV2L2P42285 1042 aaKnown RBP20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 MSH2P43246 934 aa20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 BASP1P80723 227 aaKnown RBP20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 CYP4V2Q6ZWL3 525 aaPredicted RBP20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 OTOAQ7RTW8 1153 aa20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 IGDCC3Q8IVU1 814 aa20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 UTP4Q969X6 686 aaKnown RBP20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 PIWIL1Q96J94 861 aaKnown RBP20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 TXNRD2Q9NNW7 524 aa20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 SUFUQ9UMX1 484 aa20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 CHMP2BQ9UQN3 213 aa20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 DICER1Q9UPY3 1922 aaKnown RBP20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 GOLGA8RI6L899 631 aa20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 STAG3L1P0CL83 205 aa20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 RBP3P10745 1247 aa20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 SYCP2LQ5T4T6 812 aa20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 FAM102AQ5T9C2 384 aaPredicted RBP20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 DHX37Q8IY37 1157 aaKnown RBP20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 UBA3Q8TBC4 463 aa20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 ZNF75CPQ92670 426 aaPredicted RBP20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 TMEM176AQ96HP8 235 aa20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 L3MBTL3Q96JM7 780 aaPredicted RBP20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 ETNK1Q9HBU6 452 aa20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 FETUBQ9UGM5 382 aa20.42■□□□□ 0.86
SHROOM1-202ENST00000378676 CYP3A5P20815 502 aa20.41■□□□□ 0.86
SHROOM1-202ENST00000378676 GPD2P43304 727 aa20.41■□□□□ 0.86
SHROOM1-202ENST00000378676 GABRB2P47870 512 aa20.41■□□□□ 0.86
SHROOM1-202ENST00000378676 DPH6Q7L8W6 267 aa20.41■□□□□ 0.86
SHROOM1-202ENST00000378676 ADPGKQ9BRR6 497 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms