RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 KCNB1Q14721 858 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 EPC2Q52LR7 807 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 SLC25A25Q6KCM7 469 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 MTDHQ86UE4 582 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF248Q8NDW4 579 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 DQX1Q8TE96 717 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 KIAA1586Q9HCI6 787 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF318Q5VUA4 2279 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 GIMAP1-GIMAP5A0A087WTJ2 511 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 MBD4O95243 580 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 OR1G1P47890 313 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 PTPN12Q05209 780 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 IFT88Q13099 833 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 FUT11Q495W5 492 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 AADACL4Q5VUY2 407 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 RSBN1Q5VWQ0 802 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CYP4Z1Q86W10 505 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CLHC1Q8NHS4 586 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ATP8B4Q8TF62 1192 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 HAVCR1Q96D42 359 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 NT5C1BQ96P26 610 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 TUBGCP5Q96RT8 1024 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 HEPHQ9BQS7 1158 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 TRMT13Q9NUP7 481 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 HMG20BQ9P0W2 317 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 MSH6P52701 1360 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 PLEKHH2Q8IVE3 1493 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ANKRD65E5RJM6 399 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 MTA2O94776 668 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ENDOD1O94919 500 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ZBTB7AO95365 584 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CYB5AP00167 134 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 SNRPA1P09661 255 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CTSHP09668 335 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 AFF1P51825 1210 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 RAPSNQ13702 412 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 AOC3Q16853 763 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 C2CD6Q53TS8 623 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ARMC3Q5W041 872 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ZZZ3Q8IYH5 903 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CYP4Z2PQ8N1L4 340 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 RSPH1Q8WYR4 309 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ANTXR1Q9H6X2 564 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 C12orf4Q9NQ89 552 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 PLA2G4CQ9UP65 541 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ERVK-11Q9UQG0 969 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 A0A087WZ62 844 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 A6NNZ2 444 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CBFA2T3O75081 653 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 RAD51DO75771 328 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 TRIM49P0CI25 452 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 TRIM49CP0CI26 452 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ANPEPP15144 967 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 PLGLAQ15195 96 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 PKN2Q16513 984 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CCNG2Q16589 344 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 UAP1L1Q3KQV9 507 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 TUBB8Q3ZCM7 444 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CIR1Q86X95 450 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 LRRN4CLQ8ND94 238 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 NUDT16Q96DE0 195 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 NUDT12Q9BQG2 462 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 HERPUD2Q9BSE4 406 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 MYL10Q9BUA6 226 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 KLHL4Q9C0H6 718 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 PDE11AQ9HCR9 933 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 VPS45Q9NRW7 570 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 PLAAQ9Y263 795 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 INVSQ9Y283 1065 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 FPGT-TNNI3KV9GXZ4 949 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 SUPT6HQ7KZ85 1726 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 FAM172BPA6NC97 362 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 MEN1O00255 615 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 COPEO14579 308 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 MFSD11O43934 449 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 RTN2O75298 545 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 PRH1P02810 166 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 FGFR2P21802 821 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ALDH7A1P49419 539 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CASP6P55212 293 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 MC1RQ01726 317 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 MAP2K5Q13163 448 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 CYP51A1Q16850 503 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 KBTBD12Q3ZCT8 623 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 AARDQ4LEZ3 155 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 FAM220AQ7Z4H9 259 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 TERB1Q8NA31 727 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 LSM14AQ8ND56 463 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 TRMT10AQ8TBZ6 339 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 PABPC5Q96DU9 382 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 PTCD3Q96EY7 689 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 C1QTNF1Q9BXJ1 281 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 OSBPL1AQ9BXW6 950 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 PIH1D3Q9NQM4 214 aaKnown RBP4.8□□□□□ -1.64
SCN1A-202ENST00000375405 SH3GLB2Q9NR46 395 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 VPS4AQ9UN37 437 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 ARL2BPQ9Y2Y0 163 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 RWDD3Q9Y3V2 267 aa4.8□□□□□ -1.64
SCN1A-202ENST00000375405 NACADO15069 1562 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms