RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 PPP1R26Q5T8A7 1209 aaPredicted RBP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 LRRC38Q5VT99 294 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 CATSPER4Q7RTX7 472 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 OR6B3Q8NGW1 331 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 SPATA18Q8TC71 538 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 ZMAT2Q96NC0 199 aaKnown RBP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 MAK16Q9BXY0 300 aaKnown RBP10.85□□□□□ -0.67
LIMA1-201ENST00000341247 HAUS2Q9NVX0 235 aa10.85□□□□□ -0.67
LIMA1-201ENST00000341247 C5orf60A6NFR6 353 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 KRT7P08729 469 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 RBP3P10745 1247 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 TAP1Q03518 808 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 ZNF792Q3KQV3 632 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 ZC3H12AQ5D1E8 599 aaKnown RBP10.84□□□□□ -0.67
LIMA1-201ENST00000341247 PPP6R3Q5H9R7 873 aaPredicted RBP10.84□□□□□ -0.67
LIMA1-201ENST00000341247 RNASEH2BQ5TBB1 312 aaKnown RBP10.84□□□□□ -0.67
LIMA1-201ENST00000341247 NETO2Q8NC67 525 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 CXorf38Q8TB03 319 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 SPOCK2Q92563 424 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 CENPTQ96BT3 561 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 LHX5Q9H2C1 402 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 C12orf65Q9H3J6 166 aaKnown RBP10.84□□□□□ -0.67
LIMA1-201ENST00000341247 ABCF3Q9NUQ8 709 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 NKIRAS1Q9NYS0 192 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 PPME1Q9Y570 386 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 CDH23Q9H251 3354 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 MAGEB2O15479 319 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 P4HA1P13674 534 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 ADORA2BP29275 332 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 RPL22P35268 128 aaKnown RBP10.84□□□□□ -0.67
LIMA1-201ENST00000341247 RBP5P82980 135 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 ANKRD20A8PQ5CZ79 823 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 DARS2Q6PI48 645 aaKnown RBP10.84□□□□□ -0.67
LIMA1-201ENST00000341247 ANKS4BQ8N8V4 417 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 PPTC7Q8NI37 304 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 MS4A4AQ96JQ5 239 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 TGS1Q96RS0 853 aaKnown RBP10.84□□□□□ -0.67
LIMA1-201ENST00000341247 PNMA3Q9UL41 463 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 A0A1W2PPM1 405 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 H7C0C1 242 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 ATP5DP30049 168 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 ATP5OP48047 213 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 ATXN1P54253 815 aaKnown RBP10.84□□□□□ -0.67
LIMA1-201ENST00000341247 ACTN3Q08043 901 aaPredicted RBP10.84□□□□□ -0.67
LIMA1-201ENST00000341247 HIF1AQ16665 826 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 MARCH8Q5T0T0 291 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 PMF1Q6P1K2 205 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 SLC35B2Q8TB61 432 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.84□□□□□ -0.67
LIMA1-201ENST00000341247 PRCCQ92733 491 aaPredicted RBP10.84□□□□□ -0.67
LIMA1-201ENST00000341247 NT5C1AQ9BXI3 368 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 TRIM6Q9C030 488 aaPredicted RBP10.84□□□□□ -0.67
LIMA1-201ENST00000341247 DPEP3Q9H4B8 488 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 GOLGA2P5Q9HBQ8 144 aa10.84□□□□□ -0.67
LIMA1-201ENST00000341247 BARX2Q9UMQ3 279 aaPredicted RBP10.84□□□□□ -0.67
LIMA1-201ENST00000341247 WDR91A4D1P6 747 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 SRRM3A6NNA2 597 aaPredicted RBP10.83□□□□□ -0.68
LIMA1-201ENST00000341247 AVILO75366 819 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 TRUB2O95900 331 aaKnown RBP10.83□□□□□ -0.68
LIMA1-201ENST00000341247 VDRP11473 427 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 TFE3P19532 575 aaPredicted RBP10.83□□□□□ -0.68
LIMA1-201ENST00000341247 KRT81Q14533 505 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 STAT4Q14765 748 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 CCDC142Q17RM4 750 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 USP50Q70EL3 339 aaPredicted RBP10.83□□□□□ -0.68
LIMA1-201ENST00000341247 CENPUQ71F23 418 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 CLEC4CQ8WTT0 213 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 PYROXD1Q8WU10 500 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 BRI3BPQ8WY22 251 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 CPT1BQ92523 772 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 PTPN18Q99952 460 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 KATNBL1Q9H079 304 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 NXF3Q9H4D5 531 aaKnown RBP10.83□□□□□ -0.68
LIMA1-201ENST00000341247 CHMP2BQ9UQN3 213 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 KAT6AQ92794 2004 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 SYNJ2BP-COX16A0A087WUM0 186 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 PRPSAP2O60256 369 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 TMEM63AO94886 807 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 GPD1P21695 349 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 GCAP28676 217 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 SCTRP47872 440 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 COPS2P61201 443 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 ZNF200P98182 395 aaPredicted RBP10.83□□□□□ -0.68
LIMA1-201ENST00000341247 GPR142Q7Z601 462 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 NIPA2Q8N8Q9 360 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 ASB7Q9H672 318 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 PCDH9Q9HC56 1237 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 COX16Q9P0S2 106 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 NR2E3Q9Y5X4 410 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 MCF2LO15068 1137 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 ITGAVP06756 1048 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 HNRNPH1P31943 449 aaKnown RBP10.83□□□□□ -0.68
LIMA1-201ENST00000341247 ZNF268Q14587 947 aaPredicted RBP10.83□□□□□ -0.68
LIMA1-201ENST00000341247 CA9Q16790 459 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 LDLRAD1Q5T700 205 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 NKD2Q969F2 451 aaPredicted RBP10.83□□□□□ -0.68
LIMA1-201ENST00000341247 TRABDQ9H4I3 376 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 ASNSD1Q9NWL6 643 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 CACNG4Q9UBN1 327 aa10.83□□□□□ -0.68
LIMA1-201ENST00000341247 PLXNB2O15031 1838 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms