RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 FOXP3Q9BZS1 431 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 NSMCE4AQ9NXX6 385 aa11.89□□□□□ -0.51
USP53-201ENST00000274030 RUVBL2Q9Y230 463 aaKnown RBP11.89□□□□□ -0.51
USP53-201ENST00000274030 GYS1P13807 737 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 TFE3P19532 575 aaPredicted RBP11.88□□□□□ -0.51
USP53-201ENST00000274030 BACE1P56817 501 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 GALNTL6Q49A17 601 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 TTI2Q6NXR4 508 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 MPZL3Q6UWV2 235 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 ATP6V0D2Q8N8Y2 350 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 DTNAQ9Y4J8 743 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 A0A087WZ62 844 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 ENO4A6NNW6 628 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 ZNF286BP0CG31 522 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 ATP6V1B1P15313 513 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 EFEMP1Q12805 493 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 SEPT8Q92599 483 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 FDXACB1Q9BRP7 624 aaPredicted RBP11.88□□□□□ -0.51
USP53-201ENST00000274030 C17orf75Q9HAS0 396 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 IARS2Q9NSE4 1012 aaKnown RBP11.88□□□□□ -0.51
USP53-201ENST00000274030 TRMT6Q9UJA5 497 aaKnown RBP11.88□□□□□ -0.51
USP53-201ENST00000274030 ANXA9O76027 345 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 TFRCP02786 760 aaKnown RBP11.88□□□□□ -0.51
USP53-201ENST00000274030 CKMP06732 381 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 DDX5P17844 614 aaKnown RBP11.88□□□□□ -0.51
USP53-201ENST00000274030 STIP1P31948 543 aaKnown RBP11.88□□□□□ -0.51
USP53-201ENST00000274030 NEK2P51955 445 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 OSMRQ99650 979 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 ECSITQ9BQ95 431 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 VPS33BQ9H267 617 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 HEY2Q9UBP5 337 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 CASTOR2A6NHX0 329 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 WDR47O94967 919 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 APOA1P02647 267 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 HSPA1AP0DMV8 641 aaKnown RBP11.88□□□□□ -0.51
USP53-201ENST00000274030 HSPA1BP0DMV9 641 aaKnown RBP11.88□□□□□ -0.51
USP53-201ENST00000274030 RPS12P25398 132 aaKnown RBP11.88□□□□□ -0.51
USP53-201ENST00000274030 SREBF1P36956 1147 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 SLC11A2P49281 568 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 KLC1Q07866 573 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 SLC15A2Q16348 729 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 NYAP1Q6ZVC0 841 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 ZNF571Q7Z3V5 609 aaPredicted RBP11.88□□□□□ -0.51
USP53-201ENST00000274030 RDM1Q8NG50 284 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 SRPK1Q96SB4 655 aaKnown RBP11.88□□□□□ -0.51
USP53-201ENST00000274030 PABPC3Q9H361 631 aaKnown RBP11.88□□□□□ -0.51
USP53-201ENST00000274030 RIC8BQ9NVN3 520 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 PHTF1Q9UMS5 762 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 TMEM150BA6NC51 233 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 MTSS1O43312 755 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 HNRNPCP07910 306 aaKnown RBP eCLIP11.88□□□□□ -0.51
USP53-201ENST00000274030 CDH2P19022 906 aaPredicted RBP11.88□□□□□ -0.51
USP53-201ENST00000274030 NAMPTP43490 491 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 TFDP3Q5H9I0 405 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 CCDC81Q6ZN84 652 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 ADGRF2Q8IZF7 708 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 STX19Q8N4C7 294 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 CARNMT1Q8N4J0 409 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 DNAJC9Q8WXX5 260 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 GID8Q9NWU2 228 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 MYO3AQ8NEV4 1616 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 CNTNAP4Q9C0A0 1308 aa11.88□□□□□ -0.51
USP53-201ENST00000274030 EVPLLA8MZ36 301 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 FAM107AO95990 144 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 MT-CO1P00395 513 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 CXCL8P10145 99 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 PBLDP30039 288 aaPredicted RBP11.87□□□□□ -0.51
USP53-201ENST00000274030 FNTAP49354 379 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 SLFN11Q7Z7L1 901 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 COL23A1Q86Y22 540 aaPredicted RBP11.87□□□□□ -0.51
USP53-201ENST00000274030 ANKRD7Q92527 254 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 DNAJC7Q99615 494 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 PIH1D1Q9NWS0 290 aaKnown RBP11.87□□□□□ -0.51
USP53-201ENST00000274030 CPA4Q9UI42 421 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 SPATA31A5Q5VU36 1347 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 SPATA31A7Q8IWB4 1347 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 JCHAINP01591 159 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 MBL2P11226 248 aaPredicted RBP11.87□□□□□ -0.51
USP53-201ENST00000274030 RANBP1P43487 201 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 CENPAP49450 140 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 LINC00523Q86TU6 105 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 FBXO25Q8TCJ0 367 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 PHF21AQ96BD5 680 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 RTFDC1Q9BY42 306 aaPredicted RBP11.87□□□□□ -0.51
USP53-201ENST00000274030 ZC4H2Q9NQZ6 224 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 CISHQ9NSE2 258 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 HAO1Q9UJM8 370 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 RNF112Q9ULX5 631 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 CDC42BPBQ9Y5S2 1711 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 TECPR2O15040 1411 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 TTLL13PA6NNM8 815 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 PSTPIP1O43586 416 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 SOAT2O75908 522 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 VDRP11473 427 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 DNAJB2P25686 324 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 SLC16A1P53985 500 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 LY6KQ17RY6 165 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 ZNF720Q7Z2F6 126 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 TATDN2Q93075 761 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 ILKAPQ9H0C8 392 aaPredicted RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms