RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PGBD4Q96DM1 585 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 MCRS1Q96EZ8 462 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 GPATCH2LQ9NWQ4 482 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 COX16Q9P0S2 106 aa17.35■□□□□ 0.37
USP4-201ENST00000265560 GOLGA6L10A0A0M3HER8 536 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 NT5C1B-RDH14C9J2C7 533 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 OR4Q2P0C623 313 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 PRMT2P55345 433 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 FAM193AP78312 1265 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 CCDC137Q6PK04 289 aaKnown RBP17.34■□□□□ 0.37
USP4-201ENST00000265560 TMCO2Q7Z6W1 182 aaPredicted RBP17.34■□□□□ 0.37
USP4-201ENST00000265560 TTC39CQ8N584 583 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 STKLD1Q8NE28 680 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 KHSRPQ92945 711 aaKnown RBP eCLIP17.34■□□□□ 0.37
USP4-201ENST00000265560 PCED1BQ96HM7 432 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 TNIP3Q96KP6 325 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 CALR3Q96L12 384 aaKnown RBP17.34■□□□□ 0.37
USP4-201ENST00000265560 ADAM33Q9BZ11 813 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 NEUROG2Q9H2A3 272 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 C10orf88Q9H8K7 445 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 TTC7AQ9ULT0 858 aaPredicted RBP17.34■□□□□ 0.37
USP4-201ENST00000265560 MIPP30301 263 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 VPS41P49754 854 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 DR1Q01658 176 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 CCDC105Q8IYK2 499 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 SYT15Q9BQS2 421 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 OSBPL8Q9BZF1 889 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 KRT82Q9NSB4 513 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 GABRB2P47870 512 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 TLE2Q04725 743 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 ADIGQ0VDE8 80 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 TUSC3Q13454 348 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 PIGHQ14442 188 aaPredicted RBP17.34■□□□□ 0.37
USP4-201ENST00000265560 CASP8Q14790 479 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 TRIM60Q495X7 471 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 FAM149B1Q96BN6 582 aa17.34■□□□□ 0.37
USP4-201ENST00000265560 CCDC188H7C350 402 aa17.33■□□□□ 0.37
USP4-201ENST00000265560 RPLP2P05387 115 aaKnown RBP17.33■□□□□ 0.37
USP4-201ENST00000265560 WARSP23381 471 aaKnown RBP17.33■□□□□ 0.37
USP4-201ENST00000265560 BST2Q10589 180 aaKnown RBP17.33■□□□□ 0.37
USP4-201ENST00000265560 OLFML1Q6UWY5 402 aa17.33■□□□□ 0.37
USP4-201ENST00000265560 LIMS2Q7Z4I7 341 aa17.33■□□□□ 0.37
USP4-201ENST00000265560 PEBP4Q96S96 227 aa17.33■□□□□ 0.37
USP4-201ENST00000265560 NAP1L3Q99457 506 aaPredicted RBP17.33■□□□□ 0.37
USP4-201ENST00000265560 RTP3Q9BQQ7 232 aa17.33■□□□□ 0.37
USP4-201ENST00000265560 SLC4A5Q9BY07 1137 aa17.33■□□□□ 0.37
USP4-201ENST00000265560 TBC1D13Q9NVG8 400 aa17.33■□□□□ 0.37
USP4-201ENST00000265560 SNX24Q9Y343 169 aa17.33■□□□□ 0.37
USP4-201ENST00000265560 CEP290O15078 2479 aa17.33■□□□□ 0.37
USP4-201ENST00000265560 ENPP3O14638 875 aa17.33■□□□□ 0.36
USP4-201ENST00000265560 GABRDO14764 452 aa17.33■□□□□ 0.36
USP4-201ENST00000265560 IFRD2Q12894 506 aaPredicted RBP17.33■□□□□ 0.36
USP4-201ENST00000265560 PPP1R2P3Q6NXS1 205 aa17.33■□□□□ 0.36
USP4-201ENST00000265560 IFT20Q8IY31 132 aa17.33■□□□□ 0.36
USP4-201ENST00000265560 TMLHEQ9NVH6 421 aa17.33■□□□□ 0.36
USP4-201ENST00000265560 WBP1LQ9NX94 342 aa17.33■□□□□ 0.36
USP4-201ENST00000265560 ATP11BQ9Y2G3 1177 aa17.33■□□□□ 0.36
USP4-201ENST00000265560 BCAT1P54687 386 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 GRIK3Q13003 919 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 ARHGAP17Q68EM7 881 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 TRAIPQ9BWF2 469 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 C2CD4BA6NLJ0 364 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 PSTPIP1O43586 416 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 PITX1P78337 314 aaPredicted RBP17.32■□□□□ 0.36
USP4-201ENST00000265560 SLC6A3Q01959 620 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 CCDC14Q49A88 953 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 GPRIN1Q7Z2K8 1008 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 TMEM110Q86TL2 294 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 LRRTM3Q86VH5 581 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 CEP57Q86XR8 500 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 HIPK3Q9H422 1215 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 GDF3Q9NR23 364 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 WDR35Q9P2L0 1181 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 PHF2O75151 1096 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 GPD1P21695 349 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 PLA2G4AP47712 749 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 SLC25A11Q02978 314 aaKnown RBP17.32■□□□□ 0.36
USP4-201ENST00000265560 MMRN1Q13201 1228 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 STILQ15468 1287 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 NOMO2Q5JPE7 1267 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 FAM117BQ6P1L5 589 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 CLEC20AQ6ZU45 233 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 OR10T2Q8NGX3 314 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 CCDC26Q8TAB7 109 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 LRRN4Q8WUT4 740 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 HNRNPLLQ8WVV9 542 aaKnown RBP17.32■□□□□ 0.36
USP4-201ENST00000265560 SLITRK1Q96PX8 696 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 CALN1Q9BXU9 219 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 MTUS1Q9ULD2 1270 aa17.32■□□□□ 0.36
USP4-201ENST00000265560 RNF8O76064 485 aa17.31■□□□□ 0.36
USP4-201ENST00000265560 MAP3K6O95382 1288 aa17.31■□□□□ 0.36
USP4-201ENST00000265560 BDNFP23560 247 aa17.31■□□□□ 0.36
USP4-201ENST00000265560 MNX1P50219 401 aaPredicted RBP17.31■□□□□ 0.36
USP4-201ENST00000265560 GLE1Q53GS7 698 aaKnown RBP17.31■□□□□ 0.36
USP4-201ENST00000265560 JAMLQ86YT9 394 aa17.31■□□□□ 0.36
USP4-201ENST00000265560 KATNAL2Q8IYT4 538 aa17.31■□□□□ 0.36
USP4-201ENST00000265560 RIN2Q8WYP3 895 aaPredicted RBP17.31■□□□□ 0.36
USP4-201ENST00000265560 OGDHLQ9ULD0 1010 aa17.31■□□□□ 0.36
USP4-201ENST00000265560 USP18Q9UMW8 372 aa17.31■□□□□ 0.36
USP4-201ENST00000265560 FSCN2O14926 492 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms