RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 YWHAHQ04917 246 aaPredicted RBP21.22■□□□□ 0.99
CLN3-250ENST00000636839 ZNF252P-AS1Q0IIN9 211 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 BST2Q10589 180 aaKnown RBP21.22■□□□□ 0.99
CLN3-250ENST00000636839 C11orf63Q6NUN7 778 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 PPP1R2P3Q6NXS1 205 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 FAM183BPQ6ZVS7 135 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 ZNF365Q70YC5 407 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 SYCE1Q8N0S2 351 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 EMC1Q8N766 993 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 MYCBPAPQ8TBZ2 947 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 CLEC4CQ8WTT0 213 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 HES6Q96HZ4 224 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 PKMYT1Q99640 499 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 ACBD6Q9BR61 282 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 MRPL9Q9BYD2 267 aaKnown RBP21.22■□□□□ 0.99
CLN3-250ENST00000636839 DSEQ9UL01 958 aa21.22■□□□□ 0.99
CLN3-250ENST00000636839 GRAP2O75791 330 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 AMHP03971 560 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 TYMPP19971 482 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 PCSK1P29120 753 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 BCAT1P54687 386 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 RNASE9P60153 205 aaKnown RBP21.21■□□□□ 0.99
CLN3-250ENST00000636839 INTS6LQ5JSJ4 861 aaKnown RBP21.21■□□□□ 0.99
CLN3-250ENST00000636839 FAM43BQ6ZT52 329 aaPredicted RBP21.21■□□□□ 0.99
CLN3-250ENST00000636839 CREG2Q8IUH2 290 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 C3orf20Q8ND61 904 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 NDRG1Q92597 394 aaKnown RBP21.21■□□□□ 0.99
CLN3-250ENST00000636839 MYLPFQ96A32 169 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 COLEC11Q9BWP8 271 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 DUSP16Q9BY84 665 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 MIS12Q9H081 205 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 MRPL47Q9HD33 250 aaKnown RBP21.21■□□□□ 0.99
CLN3-250ENST00000636839 METTL5Q9NRN9 209 aaKnown RBP21.21■□□□□ 0.99
CLN3-250ENST00000636839 KRT82Q9NSB4 513 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.21■□□□□ 0.99
CLN3-250ENST00000636839 V9GYY5 206 aaPredicted RBP21.21■□□□□ 0.99
CLN3-250ENST00000636839 LTBP2Q14767 1821 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 MYO1FO00160 1098 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 KCNK3O14649 394 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 DDX3YO15523 660 aaKnown RBP21.21■□□□□ 0.99
CLN3-250ENST00000636839 CAPN2P17655 700 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 MAP3K7CLP57077 242 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 OR6B2Q6IFH4 312 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 FAM171BQ6P995 826 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 CLEC20AQ6ZU45 233 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 ALG3Q92685 438 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 ZNF689Q96CS4 500 aaPredicted RBP21.21■□□□□ 0.99
CLN3-250ENST00000636839 CXXC1Q9P0U4 656 aaPredicted RBP21.21■□□□□ 0.99
CLN3-250ENST00000636839 SCINQ9Y6U3 715 aa21.21■□□□□ 0.99
CLN3-250ENST00000636839 PAPSS1O43252 624 aaPredicted RBP21.2■□□□□ 0.98
CLN3-250ENST00000636839 KRT3P12035 628 aa21.2■□□□□ 0.98
CLN3-250ENST00000636839 LCP1P13796 627 aa21.2■□□□□ 0.98
CLN3-250ENST00000636839 VARS2Q5ST30 1063 aaKnown RBP21.2■□□□□ 0.98
CLN3-250ENST00000636839 DCUN1D2Q6PH85 259 aa21.2■□□□□ 0.98
CLN3-250ENST00000636839 TMEM110Q86TL2 294 aa21.2■□□□□ 0.98
CLN3-250ENST00000636839 FAM35AQ86V20 835 aa21.2■□□□□ 0.98
CLN3-250ENST00000636839 PIGZQ86VD9 579 aa21.2■□□□□ 0.98
CLN3-250ENST00000636839 MCRS1Q96EZ8 462 aa21.2■□□□□ 0.98
CLN3-250ENST00000636839 SMOQ99835 787 aa21.2■□□□□ 0.98
CLN3-250ENST00000636839 SELENOOQ9BVL4 669 aa21.2■□□□□ 0.98
CLN3-250ENST00000636839 RC3H2Q9HBD1 1191 aaKnown RBP21.2■□□□□ 0.98
CLN3-250ENST00000636839 PRKAG2Q9UGJ0 569 aa21.2■□□□□ 0.98
CLN3-250ENST00000636839 STRIP2Q9ULQ0 834 aa21.2■□□□□ 0.98
CLN3-250ENST00000636839 ZBBXA8MT70 800 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 SLU7O95391 586 aaKnown RBP21.19■□□□□ 0.98
CLN3-250ENST00000636839 TCF4P15884 667 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 PLCB3Q01970 1234 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 ZNF268Q14587 947 aaPredicted RBP21.19■□□□□ 0.98
CLN3-250ENST00000636839 DCAF12L1Q5VU92 463 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 TRNP1Q6NT89 227 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 FUT10Q6P4F1 479 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 ZMIZ2Q8NF64 920 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 MYRIPQ8NFW9 859 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 USTQ9Y2C2 406 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 VWA8A3KMH1 1905 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 SIGLEC16A6NMB1 481 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 F8VP50 259 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 TRAPPC3O43617 180 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 SPOPO43791 374 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 AP1G2O75843 785 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 OAZ2O95190 189 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 PRLRP16471 622 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 NPR3P17342 541 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 BDNFP23560 247 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 PAX3P23760 479 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 RTP2Q5QGT7 225 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 FAM102AQ5T9C2 384 aaPredicted RBP21.19■□□□□ 0.98
CLN3-250ENST00000636839 AADACL2Q6P093 401 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 THEM5Q8N1Q8 247 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 IPO4Q8TEX9 1081 aaKnown RBP21.19■□□□□ 0.98
CLN3-250ENST00000636839 KHSRPQ92945 711 aaKnown RBP eCLIP21.19■□□□□ 0.98
CLN3-250ENST00000636839 CD101Q93033 1021 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 TMEM175Q9BSA9 504 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 VN1R3Q9BXE9 311 aa21.19■□□□□ 0.98
CLN3-250ENST00000636839 ZMYND8Q9ULU4 1186 aaPredicted RBP21.19■□□□□ 0.98
CLN3-250ENST00000636839 PROSCO94903 275 aa21.18■□□□□ 0.98
CLN3-250ENST00000636839 ALDH7A1P49419 539 aaKnown RBP21.18■□□□□ 0.98
CLN3-250ENST00000636839 NDUFV1P49821 464 aa21.18■□□□□ 0.98
CLN3-250ENST00000636839 ZNF211Q13398 564 aaPredicted RBP21.18■□□□□ 0.98
CLN3-250ENST00000636839 RSPO2Q6UXX9 243 aaPredicted RBP21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms