RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ARID3BQ8IVW6 561 aaPredicted RBP16.03■□□□□ 0.16
VPS39-210ENST00000568357 B3GALNT2Q8NCR0 500 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 FLCNQ8NFG4 579 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 SEMA4DQ92854 862 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 LRRC3BQ96PB8 259 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 DUSP9Q99956 384 aaKnown RBP16.03■□□□□ 0.16
VPS39-210ENST00000568357 SLC46A2Q9BY10 475 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 B3GNT5Q9BYG0 378 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 TMEM8AQ9HCN3 771 aa16.03■□□□□ 0.16
VPS39-210ENST00000568357 KMT2BQ9UMN6 2715 aaPredicted RBP16.03■□□□□ 0.16
VPS39-210ENST00000568357 CLDN5O00501 218 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 PSMA7O14818 248 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 NOL4O94818 638 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 CSH1P0DML2 217 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 CSH2P0DML3 217 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 CDC25CP30307 473 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 GRIK1P39086 918 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 CLCN5P51795 746 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 CACNA2D1P54289 1103 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 STIM1Q13586 685 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 SLC44A4Q53GD3 710 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 KRT39Q6A163 491 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 KLHL10Q6JEL2 608 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 VSTM1Q6UX27 236 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 MYRFLQ96LU7 910 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 ZNF518BQ9C0D4 1074 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 TASP1Q9H6P5 420 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 ARHGEF3Q9NR81 526 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 TMEM30AQ9NV96 361 aa16.02■□□□□ 0.16
VPS39-210ENST00000568357 HEPACAM2A8MVW5 462 aa16.01■□□□□ 0.15
VPS39-210ENST00000568357 SLC16A3O15427 465 aaKnown RBP16.01■□□□□ 0.15
VPS39-210ENST00000568357 P4HA1P13674 534 aa16.01■□□□□ 0.15
VPS39-210ENST00000568357 PSMC3P17980 439 aa16.01■□□□□ 0.15
VPS39-210ENST00000568357 NOP14P78316 857 aaKnown RBP16.01■□□□□ 0.15
VPS39-210ENST00000568357 ORC1Q13415 861 aa16.01■□□□□ 0.15
VPS39-210ENST00000568357 ARHGAP15Q53QZ3 475 aa16.01■□□□□ 0.15
VPS39-210ENST00000568357 TTI2Q6NXR4 508 aa16.01■□□□□ 0.15
VPS39-210ENST00000568357 CLEC17AQ6ZS10 378 aa16.01■□□□□ 0.15
VPS39-210ENST00000568357 PAQR9Q6ZVX9 377 aa16.01■□□□□ 0.15
VPS39-210ENST00000568357 DGLUCYQ7Z3D6 616 aa16.01■□□□□ 0.15
VPS39-210ENST00000568357 ACOT1Q86TX2 421 aa16.01■□□□□ 0.15
VPS39-210ENST00000568357 MFSD6LQ8IWD5 586 aa16.01■□□□□ 0.15
VPS39-210ENST00000568357 NELFBQ8WX92 580 aa16.01■□□□□ 0.15
VPS39-210ENST00000568357 TRMT2BQ96GJ1 504 aaKnown RBP16.01■□□□□ 0.15
VPS39-210ENST00000568357 TRMT61BQ9BVS5 477 aaKnown RBP16.01■□□□□ 0.15
VPS39-210ENST00000568357 BCO2Q9BYV7 579 aa16.01■□□□□ 0.15
VPS39-210ENST00000568357 KIAA1468Q9P260 1216 aa16.01■□□□□ 0.15
VPS39-210ENST00000568357 HMGXB4Q9UGU5 601 aa16.01■□□□□ 0.15
VPS39-210ENST00000568357 F8VP50 259 aa16■□□□□ 0.15
VPS39-210ENST00000568357 STK25O00506 426 aa16■□□□□ 0.15
VPS39-210ENST00000568357 TADA3O75528 432 aa16■□□□□ 0.15
VPS39-210ENST00000568357 AOC1P19801 751 aa16■□□□□ 0.15
VPS39-210ENST00000568357 PPP1R2P41236 205 aa16■□□□□ 0.15
VPS39-210ENST00000568357 NDST1P52848 882 aa16■□□□□ 0.15
VPS39-210ENST00000568357 STX17P56962 302 aa16■□□□□ 0.15
VPS39-210ENST00000568357 STARD6P59095 220 aa16■□□□□ 0.15
VPS39-210ENST00000568357 USP46P62068 366 aa16■□□□□ 0.15
VPS39-210ENST00000568357 CBWD6Q4V339 395 aa16■□□□□ 0.15
VPS39-210ENST00000568357 CBWD3Q5JTY5 395 aa16■□□□□ 0.15
VPS39-210ENST00000568357 CBWD5Q5RIA9 395 aa16■□□□□ 0.15
VPS39-210ENST00000568357 TXNDC8Q6A555 127 aa16■□□□□ 0.15
VPS39-210ENST00000568357 FILIP1Q7Z7B0 1213 aa16■□□□□ 0.15
VPS39-210ENST00000568357 CRYBG2Q8N1P7 616 aa16■□□□□ 0.15
VPS39-210ENST00000568357 MAB21L3Q8N8X9 362 aa16■□□□□ 0.15
VPS39-210ENST00000568357 FBXL13Q8NEE6 735 aa16■□□□□ 0.15
VPS39-210ENST00000568357 TNIP3Q96KP6 325 aa16■□□□□ 0.15
VPS39-210ENST00000568357 SPATA17Q96L03 361 aa16■□□□□ 0.15
VPS39-210ENST00000568357 C8orf48Q96LL4 319 aa16■□□□□ 0.15
VPS39-210ENST00000568357 CNTNAP3BQ96NU0 1288 aa16■□□□□ 0.15
VPS39-210ENST00000568357 GCNAQ96QF7 691 aa16■□□□□ 0.15
VPS39-210ENST00000568357 CNTNAP3Q9BZ76 1288 aa16■□□□□ 0.15
VPS39-210ENST00000568357 SMG9Q9H0W8 520 aaKnown RBP16■□□□□ 0.15
VPS39-210ENST00000568357 TBC1D17Q9HA65 648 aa16■□□□□ 0.15
VPS39-210ENST00000568357 RAB20Q9NX57 234 aa16■□□□□ 0.15
VPS39-210ENST00000568357 ARMCX3Q9UH62 379 aaPredicted RBP16■□□□□ 0.15
VPS39-210ENST00000568357 ZNF292O60281 2723 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 STX10O60499 249 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 PRAMEF12O95522 483 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 WEE1P30291 646 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 GDI1P31150 447 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 MXI1P50539 228 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 PFKPQ01813 784 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 DCAF17Q5H9S7 520 aaPredicted RBP15.99■□□□□ 0.15
VPS39-210ENST00000568357 TCERG1LQ5VWI1 586 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 PHLDB3Q6NSJ2 640 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 DENND5BQ6ZUT9 1274 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 MON1AQ86VX9 555 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 UNC93AQ86WB7 457 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 CMTM8Q8IZV2 173 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 FUKQ8N0W3 1084 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 WHAMMQ8TF30 809 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 TATDN2Q93075 761 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 SLC35C1Q96A29 364 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 E2F7Q96AV8 911 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 CEP63Q96MT8 703 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 TWNKQ96RR1 684 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 KCNK16Q96T55 309 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 IMPG2Q9BZV3 1241 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 ELOVL4Q9GZR5 314 aa15.99■□□□□ 0.15
VPS39-210ENST00000568357 NIF3L1Q9GZT8 377 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms