RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 VRTNQ9H8Y1 702 aa17.98■□□□□ 0.47
CLK3-210ENST00000563112 KIF9Q9HAQ2 790 aa17.98■□□□□ 0.47
CLK3-210ENST00000563112 TDP1Q9NUW8 608 aa17.98■□□□□ 0.47
CLK3-210ENST00000563112 FBXO4Q9UKT5 387 aa17.98■□□□□ 0.47
CLK3-210ENST00000563112 ZNF638Q14966 1978 aaKnown RBP17.98■□□□□ 0.47
CLK3-210ENST00000563112 WDR87Q6ZQQ6 2873 aa17.98■□□□□ 0.47
CLK3-210ENST00000563112 DENND4CQ5VZ89 1909 aa17.98■□□□□ 0.47
CLK3-210ENST00000563112 PRR23AA6NEV1 266 aa17.97■□□□□ 0.47
CLK3-210ENST00000563112 IKBKBO14920 756 aa17.97■□□□□ 0.47
CLK3-210ENST00000563112 TRIM66O15016 1216 aa17.97■□□□□ 0.47
CLK3-210ENST00000563112 P4HA1P13674 534 aa17.97■□□□□ 0.47
CLK3-210ENST00000563112 PTPN1P18031 435 aaKnown RBP17.97■□□□□ 0.47
CLK3-210ENST00000563112 SGSM1Q2NKQ1 1148 aa17.97■□□□□ 0.47
CLK3-210ENST00000563112 CC2D1AQ6P1N0 951 aaPredicted RBP17.97■□□□□ 0.47
CLK3-210ENST00000563112 GUF1Q8N442 669 aaKnown RBP17.97■□□□□ 0.47
CLK3-210ENST00000563112 PCED1BQ96HM7 432 aa17.97■□□□□ 0.47
CLK3-210ENST00000563112 ZFYVE19Q96K21 471 aa17.97■□□□□ 0.47
CLK3-210ENST00000563112 LRRC3BQ96PB8 259 aa17.97■□□□□ 0.47
CLK3-210ENST00000563112 LMAN1LQ9HAT1 526 aa17.97■□□□□ 0.47
CLK3-210ENST00000563112 TRPC7Q9HCX4 862 aa17.97■□□□□ 0.47
CLK3-210ENST00000563112 MAPK8IP1Q9UQF2 711 aa17.97■□□□□ 0.47
CLK3-210ENST00000563112 FAM186AA6NE01 2351 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 TRAV19A0A0A6YYK7 116 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 SHISA7A6NL88 538 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 MAPK13O15264 365 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 KRT13P13646 458 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 NR2F2P24468 414 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 DLG4P78352 724 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 FZD5Q13467 585 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 NFIL3Q16649 462 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 ITPRIPL2Q3MIP1 535 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 ZNF528Q3MIS6 628 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 DENND5BQ6ZUT9 1274 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 ASCL5Q7RTU5 278 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 RALGPS2Q86X27 583 aaPredicted RBP17.96■□□□□ 0.47
CLK3-210ENST00000563112 TAF4BQ92750 862 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 USP13Q92995 863 aaPredicted RBP17.96■□□□□ 0.47
CLK3-210ENST00000563112 IER2Q9BTL4 223 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 RMND1Q9NWS8 449 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 R4GN57 208 aa17.96■□□□□ 0.47
CLK3-210ENST00000563112 ATP8B3O60423 1300 aa17.96■□□□□ 0.46
CLK3-210ENST00000563112 COL4A2P08572 1712 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 SPECC1L-ADORA2AF8WAN1 911 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 USP17L7P0C7H9 530 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 PDE6CP51160 858 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 VAMP7P51809 220 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 CSTF1Q05048 431 aaKnown RBP17.95■□□□□ 0.46
CLK3-210ENST00000563112 ADAM9Q13443 819 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 LRRC32Q14392 662 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 ZNF268Q14587 947 aaPredicted RBP17.95■□□□□ 0.46
CLK3-210ENST00000563112 PPP2R5DQ14738 602 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 ZACNQ401N2 412 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 INTS8Q75QN2 995 aaKnown RBP17.95■□□□□ 0.46
CLK3-210ENST00000563112 SV2AQ7L0J3 742 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 TTC8Q8TAM2 541 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 TNIP3Q96KP6 325 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 C8orf48Q96LL4 319 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 ELOVL4Q9GZR5 314 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 CHRDQ9H2X0 955 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 GKN1Q9NS71 199 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 GTSE1Q9NYZ3 720 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 TRPM5Q9NZQ8 1165 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 CCL26Q9Y258 94 aa17.95■□□□□ 0.46
CLK3-210ENST00000563112 F8VP50 259 aa17.94■□□□□ 0.46
CLK3-210ENST00000563112 VNN1O95497 513 aa17.94■□□□□ 0.46
CLK3-210ENST00000563112 CKMP06732 381 aa17.94■□□□□ 0.46
CLK3-210ENST00000563112 TRIM21P19474 475 aaKnown RBP17.94■□□□□ 0.46
CLK3-210ENST00000563112 CTHP32929 405 aa17.94■□□□□ 0.46
CLK3-210ENST00000563112 PSMC2P35998 433 aaKnown RBP17.94■□□□□ 0.46
CLK3-210ENST00000563112 SOX9P48436 509 aa17.94■□□□□ 0.46
CLK3-210ENST00000563112 MTAPQ13126 283 aa17.94■□□□□ 0.46
CLK3-210ENST00000563112 DGKKQ5KSL6 1271 aa17.94■□□□□ 0.46
CLK3-210ENST00000563112 SCARA5Q6ZMJ2 495 aa17.94■□□□□ 0.46
CLK3-210ENST00000563112 FAM186BQ8IYM0 893 aa17.94■□□□□ 0.46
CLK3-210ENST00000563112 MAML2Q8IZL2 1156 aaPredicted RBP17.94■□□□□ 0.46
CLK3-210ENST00000563112 ZNF687Q8N1G0 1237 aa17.94■□□□□ 0.46
CLK3-210ENST00000563112 B3GALNT2Q8NCR0 500 aa17.94■□□□□ 0.46
CLK3-210ENST00000563112 DPEP3Q9H4B8 488 aa17.94■□□□□ 0.46
CLK3-210ENST00000563112 SMYD3Q9H7B4 428 aa17.94■□□□□ 0.46
CLK3-210ENST00000563112 HOOK1Q9UJC3 728 aaKnown RBP17.94■□□□□ 0.46
CLK3-210ENST00000563112 NME7Q9Y5B8 376 aa17.94■□□□□ 0.46
CLK3-210ENST00000563112 OBSL1O75147 1896 aa17.94■□□□□ 0.46
CLK3-210ENST00000563112 PATJQ8NI35 1801 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 TADA3O75528 432 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 SMC2O95347 1197 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 LMNAP02545 664 aaKnown RBP17.93■□□□□ 0.46
CLK3-210ENST00000563112 CHRNB1P11230 501 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 HDCP19113 662 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 PIK3CAP42336 1068 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 PPP3CCP48454 512 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 CDH8P55286 799 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 AMPD2Q01433 879 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 FAM160A1Q05DH4 1040 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 TNK2Q07912 1038 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 PDGFRLQ15198 375 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 MAMSTRQ6ZN01 415 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 FMR1NBQ8N0W7 255 aaPredicted RBP17.93■□□□□ 0.46
CLK3-210ENST00000563112 ATRIPQ8WXE1 791 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 CYP2S1Q96SQ9 504 aa17.93■□□□□ 0.46
CLK3-210ENST00000563112 FAM83CQ9BQN1 747 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms