RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 CCDC150Q8NCX0 1101 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 TRMT2BQ96GJ1 504 aaKnown RBP14.61□□□□□ -0.07
SHMT2-219ENST00000555563 TNIP3Q96KP6 325 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 TWNKQ96RR1 684 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 B3GNT5Q9BYG0 378 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 GPR88Q9GZN0 384 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 NUP62CLQ9H1M0 184 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 TRPV4Q9HBA0 871 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 METTL14Q9HCE5 456 aaKnown RBP14.61□□□□□ -0.07
SHMT2-219ENST00000555563 ZFP14Q9HCL3 533 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 RAB20Q9NX57 234 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 WNT16Q9UBV4 365 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 CA14Q9ULX7 337 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 COL4A3Q01955 1670 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 COL4A2P08572 1712 aa14.61□□□□□ -0.07
SHMT2-219ENST00000555563 MUC6Q6W4X9 2439 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 KRBA1A5PL33 1030 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 F8VP50 259 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 TRIM66O15016 1216 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 F11P03951 625 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 ANXA13P27216 316 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 VCPP55072 806 aaKnown RBP14.6□□□□□ -0.07
SHMT2-219ENST00000555563 CWF19L1Q69YN2 538 aaKnown RBP14.6□□□□□ -0.07
SHMT2-219ENST00000555563 VITQ6UXI7 678 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 FRMD5Q7Z6J6 570 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 UNC93AQ86WB7 457 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 RSPRY1Q96DX4 576 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 SPATA17Q96L03 361 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 C8orf48Q96LL4 319 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 MYRFLQ96LU7 910 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 ARID3AQ99856 593 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 MFSD1Q9H3U5 465 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 TASP1Q9H6P5 420 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 CYP3A43Q9HB55 503 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 ARHGEF3Q9NR81 526 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 UXTQ9UBK9 157 aaPredicted RBP14.6□□□□□ -0.07
SHMT2-219ENST00000555563 RWDD2AQ9UIY3 292 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 COQ4Q9Y3A0 265 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 DENND4CQ5VZ89 1909 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 ATP8B3O60423 1300 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 WDFY4Q6ZS81 3184 aa14.6□□□□□ -0.07
SHMT2-219ENST00000555563 CILPO75339 1184 aa14.59□□□□□ -0.07
SHMT2-219ENST00000555563 PRAMEF12O95522 483 aa14.59□□□□□ -0.07
SHMT2-219ENST00000555563 CCDC130P13994 396 aa14.59□□□□□ -0.07
SHMT2-219ENST00000555563 CD58P19256 250 aa14.59□□□□□ -0.07
SHMT2-219ENST00000555563 FMO5P49326 533 aa14.59□□□□□ -0.07
SHMT2-219ENST00000555563 IER5LQ5T953 404 aa14.59□□□□□ -0.07
SHMT2-219ENST00000555563 PAQR9Q6ZVX9 377 aa14.59□□□□□ -0.07
SHMT2-219ENST00000555563 ARID3BQ8IVW6 561 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-219ENST00000555563 FUKQ8N0W3 1084 aa14.59□□□□□ -0.07
SHMT2-219ENST00000555563 GPT2Q8TD30 523 aa14.59□□□□□ -0.07
SHMT2-219ENST00000555563 CEP295NLQ96MC4 621 aa14.59□□□□□ -0.07
SHMT2-219ENST00000555563 MED15Q96RN5 788 aa14.59□□□□□ -0.07
SHMT2-219ENST00000555563 SMG9Q9H0W8 520 aaKnown RBP14.59□□□□□ -0.07
SHMT2-219ENST00000555563 KRT82Q9NSB4 513 aa14.59□□□□□ -0.07
SHMT2-219ENST00000555563 FAM49BQ9NUQ9 324 aa14.59□□□□□ -0.07
SHMT2-219ENST00000555563 PATJQ8NI35 1801 aa14.59□□□□□ -0.07
SHMT2-219ENST00000555563 ZNF318Q5VUA4 2279 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 HEPACAM2A8MVW5 462 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 NPR3P17342 541 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 PSMC3P17980 439 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 USP46P62068 366 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 PFKPQ01813 784 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 DPCR1Q3MIW9 517 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 WDR44Q5JSH3 913 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 TXNDC8Q6A555 127 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 DENND5BQ6ZUT9 1274 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 GPIHBP1Q8IV16 184 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 TRIM59Q8IWR1 403 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 CRYBG2Q8N1P7 616 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 C12orf29Q8N999 325 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 MLKLQ8NB16 471 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 FLCNQ8NFG4 579 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 SLC2A14Q8TDB8 520 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 WHAMMQ8TF30 809 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 DEPDC1BQ8WUY9 529 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 MRPS31Q92665 395 aaKnown RBP14.58□□□□□ -0.08
SHMT2-219ENST00000555563 TATDN2Q93075 761 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 SMARCD1Q96GM5 515 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 FAXDC2Q96IV6 333 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 MED10Q9BTT4 135 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 NT5C1AQ9BXI3 368 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 SRRTQ9BXP5 876 aaKnown RBP14.58□□□□□ -0.08
SHMT2-219ENST00000555563 SLC46A2Q9BY10 475 aa14.58□□□□□ -0.08
SHMT2-219ENST00000555563 KIF26AQ9ULI4 1882 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-219ENST00000555563 GNA14O95837 355 aa14.57□□□□□ -0.08
SHMT2-219ENST00000555563 DDX6P26196 483 aaKnown RBP eCLIP14.57□□□□□ -0.08
SHMT2-219ENST00000555563 MARSP56192 900 aaKnown RBP14.57□□□□□ -0.08
SHMT2-219ENST00000555563 CMTM8Q8IZV2 173 aa14.57□□□□□ -0.08
SHMT2-219ENST00000555563 TMEM105Q8N8V8 129 aa14.57□□□□□ -0.08
SHMT2-219ENST00000555563 MAB21L3Q8N8X9 362 aa14.57□□□□□ -0.08
SHMT2-219ENST00000555563 E2F7Q96AV8 911 aa14.57□□□□□ -0.08
SHMT2-219ENST00000555563 KCNK16Q96T55 309 aa14.57□□□□□ -0.08
SHMT2-219ENST00000555563 TRMT61BQ9BVS5 477 aaKnown RBP14.57□□□□□ -0.08
SHMT2-219ENST00000555563 TTLL2Q9BWV7 592 aa14.57□□□□□ -0.08
SHMT2-219ENST00000555563 TBC1D17Q9HA65 648 aa14.57□□□□□ -0.08
SHMT2-219ENST00000555563 DMAP1Q9NPF5 467 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-219ENST00000555563 CISHQ9NSE2 258 aa14.57□□□□□ -0.08
SHMT2-219ENST00000555563 TICRRQ7Z2Z1 1910 aa14.56□□□□□ -0.08
SHMT2-219ENST00000555563 PIEZO1Q92508 2521 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms