RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 ANKRD1Q15327 319 aa11.35□□□□□ -0.59
VPS29-208ENST00000550267 FBXO43Q4G163 708 aa11.35□□□□□ -0.59
VPS29-208ENST00000550267 TTC38Q5R3I4 469 aa11.35□□□□□ -0.59
VPS29-208ENST00000550267 ZPBP2Q6X784 338 aa11.35□□□□□ -0.59
VPS29-208ENST00000550267 C1orf186Q6ZWK4 172 aa11.35□□□□□ -0.59
VPS29-208ENST00000550267 KCNK18Q7Z418 384 aa11.35□□□□□ -0.59
VPS29-208ENST00000550267 CYP2U1Q7Z449 544 aa11.35□□□□□ -0.59
VPS29-208ENST00000550267 TMEM150AQ86TG1 271 aa11.35□□□□□ -0.59
VPS29-208ENST00000550267 C4orf32Q8N8J7 132 aa11.35□□□□□ -0.59
VPS29-208ENST00000550267 TMEM161BQ8NDZ6 487 aa11.35□□□□□ -0.59
VPS29-208ENST00000550267 NTPCRQ9BSD7 190 aaKnown RBP11.35□□□□□ -0.59
VPS29-208ENST00000550267 ZCWPW1Q9H0M4 648 aa11.35□□□□□ -0.59
VPS29-208ENST00000550267 TDP1Q9NUW8 608 aa11.35□□□□□ -0.59
VPS29-208ENST00000550267 TBX20Q9UMR3 447 aa11.35□□□□□ -0.59
VPS29-208ENST00000550267 DNM3Q9UQ16 869 aa11.35□□□□□ -0.59
VPS29-208ENST00000550267 CITO14578 2027 aa11.35□□□□□ -0.59
VPS29-208ENST00000550267 PP2D1A8MPX8 630 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 XPOTO43592 962 aaKnown RBP11.34□□□□□ -0.59
VPS29-208ENST00000550267 F11P03951 625 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 MAPTP10636 758 aaKnown RBP11.34□□□□□ -0.59
VPS29-208ENST00000550267 HAPLN1P10915 354 aaPredicted RBP11.34□□□□□ -0.59
VPS29-208ENST00000550267 NLRP12P59046 1061 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 PTSQ03393 145 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 PDGFRLQ15198 375 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 SAFBQ15424 915 aaKnown RBP eCLIP11.34□□□□□ -0.59
VPS29-208ENST00000550267 ENOX2Q16206 610 aaKnown RBP11.34□□□□□ -0.59
VPS29-208ENST00000550267 PPP1R26Q5T8A7 1209 aaPredicted RBP11.34□□□□□ -0.59
VPS29-208ENST00000550267 SPATA1Q5VX52 437 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 TXNDC8Q6A555 127 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 CC2D1AQ6P1N0 951 aaPredicted RBP11.34□□□□□ -0.59
VPS29-208ENST00000550267 Q6ZVU0 165 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 STKLD1Q8NE28 680 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 TTC16Q8NEE8 873 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 NANOS1Q8WY41 292 aaKnown RBP11.34□□□□□ -0.59
VPS29-208ENST00000550267 CD101Q93033 1021 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 ACDQ96AP0 544 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 ECT2Q9H8V3 914 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 KIF9Q9HAQ2 790 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 C17orf75Q9HAS0 396 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 ZMYM5Q9UJ78 669 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 WDFY3Q8IZQ1 3526 aa11.34□□□□□ -0.59
VPS29-208ENST00000550267 TSC2P49815 1807 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 FAM208BQ5VWN6 2430 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 ANTXRLA6NF34 631 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 CYP11A1P05108 521 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 PLS3P13797 630 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 HMGA1P17096 107 aaKnown RBP11.33□□□□□ -0.6
VPS29-208ENST00000550267 GUCY2CP25092 1073 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 DDX6P26196 483 aaKnown RBP eCLIP11.33□□□□□ -0.6
VPS29-208ENST00000550267 CDC25AP30304 524 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 DHPSP49366 369 aaPredicted RBP11.33□□□□□ -0.6
VPS29-208ENST00000550267 GPR15P49685 360 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 ST3GAL1Q11201 340 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 MTF1Q14872 753 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 USP39Q53GS9 565 aaKnown RBP11.33□□□□□ -0.6
VPS29-208ENST00000550267 C9orf57Q5W0N0 161 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 JADE1Q6IE81 842 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 C11orf74Q86VG3 221 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 LRRTM3Q86VH5 581 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 CPA6Q8N4T0 437 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 IGSF22Q8N9C0 903 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 TSTD1Q8NFU3 115 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 PIGKQ92643 395 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 EXOC4Q96A65 974 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 BICD1Q96G01 975 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 PGPEP1Q9NXJ5 209 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 ABI2Q9NYB9 513 aaPredicted RBP11.33□□□□□ -0.6
VPS29-208ENST00000550267 KLK13Q9UKR3 277 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 MAGED2Q9UNF1 606 aaPredicted RBP11.33□□□□□ -0.6
VPS29-208ENST00000550267 NEUROG3Q9Y4Z2 214 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.33□□□□□ -0.6
VPS29-208ENST00000550267 ZZEF1O43149 2961 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 CEP295Q9C0D2 2601 aa11.33□□□□□ -0.6
VPS29-208ENST00000550267 SPAARA0A1B0GVQ0 90 aa11.32□□□□□ -0.6
VPS29-208ENST00000550267 SPINT1O43278 529 aa11.32□□□□□ -0.6
VPS29-208ENST00000550267 FAM189A1O60320 539 aa11.32□□□□□ -0.6
VPS29-208ENST00000550267 SMTNP53814 917 aa11.32□□□□□ -0.6
VPS29-208ENST00000550267 PDIA5Q14554 519 aa11.32□□□□□ -0.6
VPS29-208ENST00000550267 KRT79Q5XKE5 535 aa11.32□□□□□ -0.6
VPS29-208ENST00000550267 ANO7Q6IWH7 933 aa11.32□□□□□ -0.6
VPS29-208ENST00000550267 MON1AQ86VX9 555 aa11.32□□□□□ -0.6
VPS29-208ENST00000550267 SPPL2BQ8TCT7 592 aa11.32□□□□□ -0.6
VPS29-208ENST00000550267 MRPS31Q92665 395 aaKnown RBP11.32□□□□□ -0.6
VPS29-208ENST00000550267 TIPINQ9BVW5 301 aa11.32□□□□□ -0.6
VPS29-208ENST00000550267 RPF1Q9H9Y2 349 aaKnown RBP11.32□□□□□ -0.6
VPS29-208ENST00000550267 DUS2Q9NX74 493 aaKnown RBP11.32□□□□□ -0.6
VPS29-208ENST00000550267 MSRB2Q9Y3D2 182 aa11.32□□□□□ -0.6
VPS29-208ENST00000550267 WNT6Q9Y6F9 365 aa11.32□□□□□ -0.6
VPS29-208ENST00000550267 ATRXP46100 2492 aa11.32□□□□□ -0.6
VPS29-208ENST00000550267 CNOT1A5YKK6 2376 aaKnown RBP11.32□□□□□ -0.6
VPS29-208ENST00000550267 ANO9A1A5B4 782 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 TAF4O00268 1085 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 PIRO00625 290 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 CYB561D2O14569 222 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 OGTO15294 1046 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 TADA3O75528 432 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 ADRB2P07550 413 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 NFICP08651 508 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 PAX3P23760 479 aa11.31□□□□□ -0.6
VPS29-208ENST00000550267 MAPK8P45983 427 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms