RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 NDUFA10O95299 355 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 STAG3L1P0CL83 205 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 ACTN1P12814 892 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 KCNE1P15382 129 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 FERP16591 822 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 SOX5P35711 763 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 POLR2FP61218 127 aaKnown RBP9.03□□□□□ -0.96
VPS29-203ENST00000546588 NCBP1Q09161 790 aaKnown RBP9.03□□□□□ -0.96
VPS29-203ENST00000546588 MTA1Q13330 715 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 CAMK2GQ13555 558 aaPredicted RBP9.03□□□□□ -0.96
VPS29-203ENST00000546588 ZKSCAN8Q15776 578 aaPredicted RBP9.03□□□□□ -0.96
VPS29-203ENST00000546588 PTGISQ16647 500 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 SLC10A6Q3KNW5 377 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 FBXO47Q5MNV8 452 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 SFMBT2Q5VUG0 894 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 ANKRD33Q7Z3H0 272 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 CACNA2D4Q7Z3S7 1137 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 SNX27Q96L92 541 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 TOX2Q96NM4 488 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 CHP1Q99653 195 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 CRACR2AQ9BSW2 395 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 FAM49AQ9H0Q0 323 aaPredicted RBP9.03□□□□□ -0.96
VPS29-203ENST00000546588 XYLT2Q9H1B5 865 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 TOPORSQ9NS56 1045 aaPredicted RBP9.03□□□□□ -0.96
VPS29-203ENST00000546588 ZNHIT6Q9NWK9 470 aaKnown RBP9.03□□□□□ -0.96
VPS29-203ENST00000546588 REXO2Q9Y3B8 237 aaKnown RBP9.03□□□□□ -0.96
VPS29-203ENST00000546588 CDY2AQ9Y6F7 541 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 RPS6KL1Q9Y6S9 549 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 TTC3P53804 2025 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 KIAA1671Q9BY89 1806 aa9.03□□□□□ -0.96
VPS29-203ENST00000546588 CEP350Q5VT06 3117 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 KBTBD13C9JR72 458 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 PJA2O43164 708 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 MAP3K6O95382 1288 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 HLA-DRAP01903 254 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 CCDC175P0C221 793 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 CXCL8P10145 99 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 CYP3A5P20815 502 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 ACO1P21399 889 aaKnown RBP9.02□□□□□ -0.97
VPS29-203ENST00000546588 TBXAS1P24557 533 aaPredicted RBP9.02□□□□□ -0.97
VPS29-203ENST00000546588 ATICP31939 592 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 STAT1P42224 750 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 RAB27AP51159 221 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 APBA1Q02410 837 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 GOLGA8FQ08AF8 430 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 GOLGA8DPQ0D2H9 430 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 SLC18A3Q16572 532 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 DUOXA2Q1HG44 320 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 SLC9C1Q4G0N8 1177 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 C10orf76Q5T2E6 689 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 RRAGAQ7L523 313 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 CATSPER4Q7RTX7 472 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 TRAPPC11Q7Z392 1133 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 LIMS2Q7Z4I7 341 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 MRPL10Q7Z7H8 261 aaKnown RBP9.02□□□□□ -0.97
VPS29-203ENST00000546588 REXO1L1PQ8IX06 675 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 FAM71AQ8IYT1 594 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 CACTIN-AS1Q8N1I8 211 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 SMG8Q8ND04 991 aaKnown RBP9.02□□□□□ -0.97
VPS29-203ENST00000546588 OR5B17Q8NGF7 314 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 SLC30A5Q8TAD4 765 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 SH3TC2Q8TF17 1288 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 RSPH1Q8WYR4 309 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 ANAPC16Q96DE5 110 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 CPB2Q96IY4 423 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 RHOVQ96L33 236 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 KREMEN1Q96MU8 473 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 NT5C1BQ96P26 610 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 PLVAPQ9BX97 442 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 TRIM55Q9BYV6 548 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 RASSF4Q9H2L5 321 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 NHEJ1Q9H9Q4 299 aaPredicted RBP9.02□□□□□ -0.97
VPS29-203ENST00000546588 RPF1Q9H9Y2 349 aaKnown RBP9.02□□□□□ -0.97
VPS29-203ENST00000546588 STARD7Q9NQZ5 370 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 GEMIN8Q9NWZ8 242 aaKnown RBP9.02□□□□□ -0.97
VPS29-203ENST00000546588 DNAJC12Q9UKB3 198 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 ITGA11Q9UKX5 1188 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 PPP2R2CQ9Y2T4 447 aa9.02□□□□□ -0.97
VPS29-203ENST00000546588 NOC2LQ9Y3T9 749 aaKnown RBP9.02□□□□□ -0.97
VPS29-203ENST00000546588 BTNL10A8MVZ5 291 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 KIF2AO00139 706 aaPredicted RBP9.01□□□□□ -0.97
VPS29-203ENST00000546588 PDE2AO00408 941 aaPredicted RBP9.01□□□□□ -0.97
VPS29-203ENST00000546588 ZNF263O14978 683 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 TLR3O15455 904 aaKnown RBP9.01□□□□□ -0.97
VPS29-203ENST00000546588 ZSCAN12O43309 604 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 PEX14O75381 377 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 CSDE1O75534 798 aaKnown RBP9.01□□□□□ -0.97
VPS29-203ENST00000546588 PARNO95453 639 aaKnown RBP9.01□□□□□ -0.97
VPS29-203ENST00000546588 CCDC172P0C7W6 258 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 DLATP10515 647 aaKnown RBP9.01□□□□□ -0.97
VPS29-203ENST00000546588 CKBP12277 381 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 CCL5P13501 91 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 TNNI1P19237 187 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 CYLC1P35663 651 aaPredicted RBP9.01□□□□□ -0.97
VPS29-203ENST00000546588 ETFBP38117 255 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 ZNF132P52740 706 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 MFAP3P55082 362 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 NOP14P78316 857 aaKnown RBP9.01□□□□□ -0.97
VPS29-203ENST00000546588 ATP11AP98196 1134 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 SLC20A2Q08357 652 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms