RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 C5orf67F2Z3F1 127 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 TMEM189-UBE2V1I3L0A0 370 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 MYO1FO00160 1098 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 B4GALT3O60512 393 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 CYP11A1P05108 521 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 RB1P06400 928 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 UQCRHP07919 91 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 CTNNB1P35222 781 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 SLC1A1P43005 524 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 GABRB2P47870 512 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 PPP1R26Q5T8A7 1209 aaPredicted RBP22.39■■□□□ 1.17
VPS28-212ENST00000530836 WSCD1Q658N2 575 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 KCNT2Q6UVM3 1135 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 METTL23Q86XA0 190 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 COLGALT2Q8IYK4 626 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 C12orf29Q8N999 325 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 COLGALT1Q8NBJ5 622 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 C3orf20Q8ND61 904 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 IPO4Q8TEX9 1081 aaKnown RBP22.39■■□□□ 1.17
VPS28-212ENST00000530836 STK32AQ8WU08 396 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 ARNTL2Q8WYA1 636 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 SYNCQ9H7C4 482 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 ANAPC7Q9UJX3 599 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 PCDHB12Q9Y5F1 795 aa22.39■■□□□ 1.17
VPS28-212ENST00000530836 GBF1Q92538 1859 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 M0QZQ0 153 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 NCK2O43639 380 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 PDGFRBP09619 1106 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 ALDH7A1P49419 539 aaKnown RBP22.38■■□□□ 1.17
VPS28-212ENST00000530836 BCAR1P56945 870 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 PDCLQ13371 301 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 ZNF268Q14587 947 aaPredicted RBP22.38■■□□□ 1.17
VPS28-212ENST00000530836 MESDQ14696 234 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 GOLGA7BQ2TAP0 167 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 PKDCCQ504Y2 493 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 DNAJC24Q6P3W2 148 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 B3GALNT2Q8NCR0 500 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 C3orf58Q8NDZ4 430 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 FEZF2Q8TBJ5 459 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 ZNF558Q96NG5 402 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 SELENOOQ9BVL4 669 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 DNAJB4Q9UDY4 337 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 NME7Q9Y5B8 376 aa22.38■■□□□ 1.17
VPS28-212ENST00000530836 FAM170AA1A519 330 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 CTAGE15A4D2H0 777 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 CARNS1A5YM72 827 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 ALDH2P05091 517 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 GALTP07902 379 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 CTAGE8P0CG41 777 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 LMO2P25791 158 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 PCSK1P29120 753 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 PAFAH1B1P43034 410 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 PTPN20Q4JDL3 420 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 TIGD5Q53EQ6 642 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 CTAGE6Q86UF2 777 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 CTAGE4Q8IX94 777 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 UBL4BQ8N7F7 174 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 ANKRD52Q8NB46 1076 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 FBXO22Q8NEZ5 403 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 SUSD3Q96L08 255 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 PAAF1Q9BRP4 392 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 TMEM175Q9BSA9 504 aa22.37■■□□□ 1.17
VPS28-212ENST00000530836 SRGAP2O75044 1071 aa22.36■■□□□ 1.17
VPS28-212ENST00000530836 BCAT1P54687 386 aa22.36■■□□□ 1.17
VPS28-212ENST00000530836 SLC8A3P57103 927 aa22.36■■□□□ 1.17
VPS28-212ENST00000530836 GRIN2CQ14957 1233 aa22.36■■□□□ 1.17
VPS28-212ENST00000530836 DPEP3Q9H4B8 488 aa22.36■■□□□ 1.17
VPS28-212ENST00000530836 CYLDQ9NQC7 956 aa22.36■■□□□ 1.17
VPS28-212ENST00000530836 FAM49BQ9NUQ9 324 aa22.36■■□□□ 1.17
VPS28-212ENST00000530836 DDX43Q9NXZ2 648 aaKnown RBP22.36■■□□□ 1.17
VPS28-212ENST00000530836 CACNG4Q9UBN1 327 aa22.36■■□□□ 1.17
VPS28-212ENST00000530836 CDH9Q9ULB4 789 aa22.36■■□□□ 1.17
VPS28-212ENST00000530836 TCRBV5S1A1TA0A578 114 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 EPOPA6NHQ4 379 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 TRAPPC3O43617 180 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 PTPN1P18031 435 aaKnown RBP22.35■■□□□ 1.17
VPS28-212ENST00000530836 TYMPP19971 482 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 PBX3P40426 434 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 SLC11A1P49279 550 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 BST2Q10589 180 aaKnown RBP22.35■■□□□ 1.17
VPS28-212ENST00000530836 CLUL1Q15846 466 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 CFAP221Q4G0U5 840 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 CCDC181Q5TID7 509 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 Q7L0L9 218 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 OSTM1Q86WC4 334 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 CREG2Q8IUH2 290 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 KLHL23Q8NBE8 558 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 GADD45GIP1Q8TAE8 222 aaPredicted RBP22.35■■□□□ 1.17
VPS28-212ENST00000530836 FAM161BQ96MY7 647 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 CPXM1Q96SM3 734 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 HNRNPABQ99729 332 aaKnown RBP22.35■■□□□ 1.17
VPS28-212ENST00000530836 C11orf84Q9BUA3 381 aaPredicted RBP22.35■■□□□ 1.17
VPS28-212ENST00000530836 GOLPH3Q9H4A6 298 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 CHORDC1Q9UHD1 332 aaPredicted RBP22.35■■□□□ 1.17
VPS28-212ENST00000530836 IP6K2Q9UHH9 426 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 CYTH4Q9UIA0 394 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 PACSIN2Q9UNF0 486 aaPredicted RBP22.35■■□□□ 1.17
VPS28-212ENST00000530836 CCDC66A2RUB6 948 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 H3BNC9 293 aa22.35■■□□□ 1.17
VPS28-212ENST00000530836 COMTP21964 271 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms