RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 MCCD1P59942 119 aaPredicted RBP26.3■■□□□ 1.8
UPF3A-209ENST00000492270 NHLH1Q02575 133 aa26.3■■□□□ 1.8
UPF3A-209ENST00000492270 ORC1Q13415 861 aa26.3■■□□□ 1.8
UPF3A-209ENST00000492270 TXNDC8Q6A555 127 aa26.3■■□□□ 1.8
UPF3A-209ENST00000492270 TRMT2BQ96GJ1 504 aaKnown RBP26.3■■□□□ 1.8
UPF3A-209ENST00000492270 PRRX2Q99811 253 aa26.3■■□□□ 1.8
UPF3A-209ENST00000492270 B3GNT5Q9BYG0 378 aa26.3■■□□□ 1.8
UPF3A-209ENST00000492270 TMEM8AQ9HCN3 771 aa26.3■■□□□ 1.8
UPF3A-209ENST00000492270 MYO16Q9Y6X6 1858 aa26.3■■□□□ 1.8
UPF3A-209ENST00000492270 GALR2O43603 387 aaPredicted RBP26.29■■□□□ 1.8
UPF3A-209ENST00000492270 CD72P21854 359 aa26.29■■□□□ 1.8
UPF3A-209ENST00000492270 NOP14P78316 857 aaKnown RBP26.29■■□□□ 1.8
UPF3A-209ENST00000492270 TPRG1Q6ZUI0 275 aa26.29■■□□□ 1.8
UPF3A-209ENST00000492270 MAB21L3Q8N8X9 362 aa26.29■■□□□ 1.8
UPF3A-209ENST00000492270 DNASE1L2Q92874 299 aa26.29■■□□□ 1.8
UPF3A-209ENST00000492270 MYRFLQ96LU7 910 aa26.29■■□□□ 1.8
UPF3A-209ENST00000492270 DDX23Q9BUQ8 820 aaKnown RBP26.29■■□□□ 1.8
UPF3A-209ENST00000492270 F8VP50 259 aa26.28■■□□□ 1.8
UPF3A-209ENST00000492270 DCNP07585 359 aaKnown RBP26.28■■□□□ 1.8
UPF3A-209ENST00000492270 P4HA1P13674 534 aa26.28■■□□□ 1.8
UPF3A-209ENST00000492270 CCNE1P24864 410 aa26.28■■□□□ 1.8
UPF3A-209ENST00000492270 PTPN5P54829 565 aa26.28■■□□□ 1.8
UPF3A-209ENST00000492270 USP46P62068 366 aa26.28■■□□□ 1.8
UPF3A-209ENST00000492270 UBE2HP62256 183 aa26.28■■□□□ 1.8
UPF3A-209ENST00000492270 FKBP3Q00688 224 aaKnown RBP26.28■■□□□ 1.8
UPF3A-209ENST00000492270 PRKCQQ04759 706 aa26.28■■□□□ 1.8
UPF3A-209ENST00000492270 LRRC63Q05C16 580 aa26.28■■□□□ 1.8
UPF3A-209ENST00000492270 MORC3Q14149 939 aa26.28■■□□□ 1.8
UPF3A-209ENST00000492270 ACOT1Q86TX2 421 aa26.28■■□□□ 1.8
UPF3A-209ENST00000492270 CMTM8Q8IZV2 173 aa26.28■■□□□ 1.8
UPF3A-209ENST00000492270 PJA1Q8NG27 643 aa26.28■■□□□ 1.8
UPF3A-209ENST00000492270 E2F7Q96AV8 911 aa26.28■■□□□ 1.8
UPF3A-209ENST00000492270 SHDQ96IW2 340 aa26.28■■□□□ 1.8
UPF3A-209ENST00000492270 SPATA17Q96L03 361 aa26.28■■□□□ 1.8
UPF3A-209ENST00000492270 GTPBP4Q9BZE4 634 aaKnown RBP26.28■■□□□ 1.8
UPF3A-209ENST00000492270 UXTQ9UBK9 157 aaPredicted RBP26.28■■□□□ 1.8
UPF3A-209ENST00000492270 SHISA7A6NL88 538 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 DPYSL4O14531 572 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 PSMA7O14818 248 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 SLC16A3O15427 465 aaKnown RBP26.27■■□□□ 1.8
UPF3A-209ENST00000492270 ANXA13P27216 316 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 MXI1P50539 228 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 NDST1P52848 882 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 FCHO2Q0JRZ9 810 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 STIM1Q13586 685 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 DCAF17Q5H9S7 520 aaPredicted RBP26.27■■□□□ 1.8
UPF3A-209ENST00000492270 KRT39Q6A163 491 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 KLHL10Q6JEL2 608 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 CCDC105Q8IYK2 499 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 MRPS31Q92665 395 aaKnown RBP26.27■■□□□ 1.8
UPF3A-209ENST00000492270 SEMA4DQ92854 862 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 IRF7Q92985 503 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 BCO2Q9BYV7 579 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 IMPG2Q9BZV3 1241 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 ELOVL4Q9GZR5 314 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 CCL26Q9Y258 94 aa26.27■■□□□ 1.8
UPF3A-209ENST00000492270 MTF2Q9Y483 593 aaPredicted RBP26.27■■□□□ 1.8
UPF3A-209ENST00000492270 KANSL1LA0AUZ9 987 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 PPP1R3GB7ZBB8 358 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 H0Y858 1186 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 ARNTLO00327 626 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 ZNF263O14978 683 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 TRIM66O15016 1216 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 GLULP15104 373 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 WEE1P30291 646 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 GTF2H1P32780 548 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 NUBP1P53384 320 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 TCERG1LQ5VWI1 586 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 DENND5BQ6ZUT9 1274 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 PAQR9Q6ZVX9 377 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 FAM35AQ86V20 835 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 YAF2Q8IY57 180 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 DHTKD1Q96HY7 919 aaPredicted RBP26.26■■□□□ 1.79
UPF3A-209ENST00000492270 ZFYVE19Q96K21 471 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 DLGAP2Q9P1A6 1054 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 SIT1Q9Y3P8 196 aa26.26■■□□□ 1.79
UPF3A-209ENST00000492270 UBXN2BQ14CS0 331 aa26.25■■□□□ 1.79
UPF3A-209ENST00000492270 CAMK4Q16566 473 aa26.25■■□□□ 1.79
UPF3A-209ENST00000492270 DTWD2Q8NBA8 298 aa26.25■■□□□ 1.79
UPF3A-209ENST00000492270 TNIP3Q96KP6 325 aa26.25■■□□□ 1.79
UPF3A-209ENST00000492270 C8orf48Q96LL4 319 aa26.25■■□□□ 1.79
UPF3A-209ENST00000492270 TWNKQ96RR1 684 aa26.25■■□□□ 1.79
UPF3A-209ENST00000492270 SLC22A12Q96S37 553 aa26.25■■□□□ 1.79
UPF3A-209ENST00000492270 PHOX2BQ99453 314 aa26.25■■□□□ 1.79
UPF3A-209ENST00000492270 DUSP9Q99956 384 aaKnown RBP26.25■■□□□ 1.79
UPF3A-209ENST00000492270 MED10Q9BTT4 135 aa26.25■■□□□ 1.79
UPF3A-209ENST00000492270 NIF3L1Q9GZT8 377 aa26.25■■□□□ 1.79
UPF3A-209ENST00000492270 TRPC7Q9HCX4 862 aa26.25■■□□□ 1.79
UPF3A-209ENST00000492270 FAM86C1Q9NVL1 165 aa26.25■■□□□ 1.79
UPF3A-209ENST00000492270 CTNND2Q9UQB3 1225 aa26.25■■□□□ 1.79
UPF3A-209ENST00000492270 CACNA1HO95180 2353 aa26.24■■□□□ 1.79
UPF3A-209ENST00000492270 CHADO15335 359 aa26.24■■□□□ 1.79
UPF3A-209ENST00000492270 CCDC130P13994 396 aa26.24■■□□□ 1.79
UPF3A-209ENST00000492270 DDX6P26196 483 aaKnown RBP eCLIP26.24■■□□□ 1.79
UPF3A-209ENST00000492270 AVPR1AP37288 418 aa26.24■■□□□ 1.79
UPF3A-209ENST00000492270 CBWD6Q4V339 395 aa26.24■■□□□ 1.79
UPF3A-209ENST00000492270 CBWD3Q5JTY5 395 aa26.24■■□□□ 1.79
UPF3A-209ENST00000492270 CBWD5Q5RIA9 395 aa26.24■■□□□ 1.79
UPF3A-209ENST00000492270 MON1AQ86VX9 555 aa26.24■■□□□ 1.79
UPF3A-209ENST00000492270 RIN3Q8TB24 985 aa26.24■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms