RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 ANTXRLA6NF34 631 aa18.46■□□□□ 0.55
VIM-204ENST00000478746 TRAK2O60296 914 aa18.46■□□□□ 0.55
VIM-204ENST00000478746 ENGP17813 658 aa18.46■□□□□ 0.55
VIM-204ENST00000478746 HDCP19113 662 aa18.46■□□□□ 0.55
VIM-204ENST00000478746 OPRD1P41143 372 aa18.46■□□□□ 0.55
VIM-204ENST00000478746 P2RY2P41231 377 aa18.46■□□□□ 0.55
VIM-204ENST00000478746 MRPS21P82921 87 aaKnown RBP18.46■□□□□ 0.55
VIM-204ENST00000478746 ZC2HC1CQ53FD0 456 aaPredicted RBP18.46■□□□□ 0.55
VIM-204ENST00000478746 SLFN12LQ6IEE8 588 aa18.46■□□□□ 0.55
VIM-204ENST00000478746 TMEM92Q6UXU6 159 aa18.46■□□□□ 0.55
VIM-204ENST00000478746 ARMCX6Q7L4S7 300 aa18.46■□□□□ 0.55
VIM-204ENST00000478746 LEO1Q8WVC0 666 aaPredicted RBP18.46■□□□□ 0.55
VIM-204ENST00000478746 SPACA7Q96KW9 195 aa18.46■□□□□ 0.55
VIM-204ENST00000478746 ACBD6Q9BR61 282 aa18.46■□□□□ 0.55
VIM-204ENST00000478746 PARVGQ9HBI0 331 aa18.46■□□□□ 0.55
VIM-204ENST00000478746 TMEM74BQ9NUR3 256 aa18.46■□□□□ 0.55
VIM-204ENST00000478746 GCNT4Q9P109 453 aa18.46■□□□□ 0.55
VIM-204ENST00000478746 AGO2Q9UKV8 859 aaKnown RBP18.46■□□□□ 0.55
VIM-204ENST00000478746 CACNA1EQ15878 2313 aa18.46■□□□□ 0.55
VIM-204ENST00000478746 C2orf78A6NCI8 922 aa18.45■□□□□ 0.54
VIM-204ENST00000478746 TCF3P15923 654 aa18.45■□□□□ 0.54
VIM-204ENST00000478746 ABCD1P33897 745 aa18.45■□□□□ 0.54
VIM-204ENST00000478746 PNPLA4P41247 253 aa18.45■□□□□ 0.54
VIM-204ENST00000478746 GTF2BQ00403 316 aa18.45■□□□□ 0.54
VIM-204ENST00000478746 DHX8Q14562 1220 aaKnown RBP18.45■□□□□ 0.54
VIM-204ENST00000478746 KCNB1Q14721 858 aa18.45■□□□□ 0.54
VIM-204ENST00000478746 TMEM119Q4V9L6 283 aa18.45■□□□□ 0.54
VIM-204ENST00000478746 PIP4P1Q86T03 277 aa18.45■□□□□ 0.54
VIM-204ENST00000478746 GPBP1Q86WP2 473 aa18.45■□□□□ 0.54
VIM-204ENST00000478746 PDCL2Q8N4E4 241 aa18.45■□□□□ 0.54
VIM-204ENST00000478746 ZNF560Q96MR9 790 aa18.45■□□□□ 0.54
VIM-204ENST00000478746 FNBP1Q96RU3 617 aa18.45■□□□□ 0.54
VIM-204ENST00000478746 ZHX3Q9H4I2 956 aa18.45■□□□□ 0.54
VIM-204ENST00000478746 DDX43Q9NXZ2 648 aaKnown RBP18.45■□□□□ 0.54
VIM-204ENST00000478746 GTF3C4Q9UKN8 822 aa18.45■□□□□ 0.54
VIM-204ENST00000478746 VWA3AA6NCI4 1184 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 MYMKA6NI61 221 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 UPK3BL1B0FP48 263 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 UPK3BL2E5RIL1 263 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 H0Y626 953 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 TULP1O00294 542 aaPredicted RBP18.44■□□□□ 0.54
VIM-204ENST00000478746 HUS1O60921 280 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 TRIM16O95361 564 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 HNRNPLP14866 589 aaKnown RBP eCLIP18.44■□□□□ 0.54
VIM-204ENST00000478746 ACAT1P24752 427 aaKnown RBP18.44■□□□□ 0.54
VIM-204ENST00000478746 DPP6P42658 865 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 PTGER3P43115 390 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 ZNF131P52739 623 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 ATXN3P54252 364 aaPredicted RBP18.44■□□□□ 0.54
VIM-204ENST00000478746 ATP2C1P98194 919 aaPredicted RBP18.44■□□□□ 0.54
VIM-204ENST00000478746 MYL7Q01449 175 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 POU5F1Q01860 360 aaKnown RBP18.44■□□□□ 0.54
VIM-204ENST00000478746 SEMA3BQ13214 749 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 BYSLQ13895 437 aaKnown RBP18.44■□□□□ 0.54
VIM-204ENST00000478746 LMBRD2Q68DH5 695 aaPredicted RBP18.44■□□□□ 0.54
VIM-204ENST00000478746 SLC23A3Q6PIS1 610 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 SCN4BQ8IWT1 228 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 WHAMMQ8TF30 809 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 POLMQ9NP87 494 aaPredicted RBP18.44■□□□□ 0.54
VIM-204ENST00000478746 ARHGAP26Q9UNA1 814 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 PTPRDP23468 1912 aa18.44■□□□□ 0.54
VIM-204ENST00000478746 ANAPC1Q9H1A4 1944 aa18.43■□□□□ 0.54
VIM-204ENST00000478746 TISP43B9A030 160 aa18.43■□□□□ 0.54
VIM-204ENST00000478746 TAF4O00268 1085 aa18.43■□□□□ 0.54
VIM-204ENST00000478746 IL18RAPO95256 599 aa18.43■□□□□ 0.54
VIM-204ENST00000478746 KLF8O95600 359 aaPredicted RBP18.43■□□□□ 0.54
VIM-204ENST00000478746 KRT18P05783 430 aaKnown RBP18.43■□□□□ 0.54
VIM-204ENST00000478746 NEFLP07196 543 aa18.43■□□□□ 0.54
VIM-204ENST00000478746 PDE6CP51160 858 aa18.43■□□□□ 0.54
VIM-204ENST00000478746 INTS6LQ5JSJ4 861 aaKnown RBP18.43■□□□□ 0.54
VIM-204ENST00000478746 SPDYCQ5MJ68 293 aa18.43■□□□□ 0.54
VIM-204ENST00000478746 NT5DC4Q86YG4 428 aa18.43■□□□□ 0.54
VIM-204ENST00000478746 SPATA2LQ8IUW3 424 aaPredicted RBP18.43■□□□□ 0.54
VIM-204ENST00000478746 TMEM86AQ8N2M4 240 aa18.43■□□□□ 0.54
VIM-204ENST00000478746 HDDC3Q8N4P3 179 aa18.43■□□□□ 0.54
VIM-204ENST00000478746 ALLCQ8N6M5 410 aa18.43■□□□□ 0.54
VIM-204ENST00000478746 FRMD1Q8N878 549 aa18.43■□□□□ 0.54
VIM-204ENST00000478746 TXNDC5Q8NBS9 432 aaKnown RBP18.43■□□□□ 0.54
VIM-204ENST00000478746 BCCIPQ9P287 314 aaKnown RBP eCLIP18.43■□□□□ 0.54
VIM-204ENST00000478746 MBD1Q9UIS9 605 aaPredicted RBP18.43■□□□□ 0.54
VIM-204ENST00000478746 L1RE1Q9UN81 338 aa18.43■□□□□ 0.54
VIM-204ENST00000478746 AGAP1Q9UPQ3 857 aa18.43■□□□□ 0.54
VIM-204ENST00000478746 STYXL1Q9Y6J8 313 aa18.43■□□□□ 0.54
VIM-204ENST00000478746 FAM221BA6H8Z2 402 aa18.42■□□□□ 0.54
VIM-204ENST00000478746 CFIP05156 583 aa18.42■□□□□ 0.54
VIM-204ENST00000478746 TIE1P35590 1138 aa18.42■□□□□ 0.54
VIM-204ENST00000478746 GAB4Q2WGN9 574 aa18.42■□□□□ 0.54
VIM-204ENST00000478746 CFAP221Q4G0U5 840 aa18.42■□□□□ 0.54
VIM-204ENST00000478746 LYSMD4Q5XG99 296 aa18.42■□□□□ 0.54
VIM-204ENST00000478746 CRELD2Q6UXH1 353 aaPredicted RBP18.42■□□□□ 0.54
VIM-204ENST00000478746 ADGRG2Q8IZP9 1017 aa18.42■□□□□ 0.54
VIM-204ENST00000478746 PGBD3Q8N328 593 aa18.42■□□□□ 0.54
VIM-204ENST00000478746 CHCHD4Q8N4Q1 142 aa18.42■□□□□ 0.54
VIM-204ENST00000478746 IL17RCQ8NAC3 791 aa18.42■□□□□ 0.54
VIM-204ENST00000478746 SPATA18Q8TC71 538 aa18.42■□□□□ 0.54
VIM-204ENST00000478746 ZSCAN31Q96LW9 406 aaPredicted RBP18.42■□□□□ 0.54
VIM-204ENST00000478746 PNKPQ96T60 521 aa18.42■□□□□ 0.54
VIM-204ENST00000478746 PKMYT1Q99640 499 aa18.42■□□□□ 0.54
VIM-204ENST00000478746 GTPBP2Q9BX10 602 aaKnown RBP18.42■□□□□ 0.54
VIM-204ENST00000478746 PILRBQ9UKJ0 227 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms