RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 PPP1R2P41236 205 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 CACNA2D1P54289 1103 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 MLF2Q15773 248 aaPredicted RBP13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 CAMK4Q16566 473 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 TXNDC8Q6A555 127 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 KLHL10Q6JEL2 608 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 ACOT1Q86TX2 421 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 CMTM8Q8IZV2 173 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 CRYBG2Q8N1P7 616 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 MAB21L3Q8N8X9 362 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 DEPDC1BQ8WUY9 529 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 SEMA4DQ92854 862 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 SHDQ96IW2 340 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 TNIP3Q96KP6 325 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 C8orf48Q96LL4 319 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 DUSP9Q99956 384 aaKnown RBP13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 DDX23Q9BUQ8 820 aaKnown RBP13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 BCO2Q9BYV7 579 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 IMPG2Q9BZV3 1241 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 ZNF518BQ9C0D4 1074 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 TMEM30AQ9NV96 361 aa13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 UXTQ9UBK9 157 aaPredicted RBP13.57□□□□□ -0.24
PRPF40A-203ENST00000448428 MIA3Q5JRA6 1907 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 F8VP50 259 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 ZNF263O14978 683 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 TRIM66O15016 1216 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 STX10O60499 249 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 TADA3O75528 432 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 PRAMEF12O95522 483 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 RFX1P22670 979 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 ANXA13P27216 316 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 NDST1P52848 882 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 NUBP1P53384 320 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 USP46P62068 366 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 NOP14P78316 857 aaKnown RBP13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 PRKCQQ04759 706 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 TCF15Q12870 199 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 ORC1Q13415 861 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 TCERG1LQ5VWI1 586 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 TTI2Q6NXR4 508 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 PAQR9Q6ZVX9 377 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 FILIP1Q7Z7B0 1213 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 MON1AQ86VX9 555 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 UNC93AQ86WB7 457 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 FBXL13Q8NEE6 735 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 NELFBQ8WX92 580 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 MRPS31Q92665 395 aaKnown RBP13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 DNASE1L2Q92874 299 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 IRF7Q92985 503 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 CEP295NLQ96MC4 621 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 PRRX2Q99811 253 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 FOXQ1Q9C009 403 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 ELOVL4Q9GZR5 314 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 SMG9Q9H0W8 520 aaKnown RBP13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 HEBP1Q9NRV9 189 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 HMGXB4Q9UGU5 601 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 ARMCX3Q9UH62 379 aaPredicted RBP13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 ZMYM5Q9UJ78 669 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 SIT1Q9Y3P8 196 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 KIF26AQ9ULI4 1882 aaPredicted RBP13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 COL4A2P08572 1712 aa13.56□□□□□ -0.24
PRPF40A-203ENST00000448428 KANSL1LA0AUZ9 987 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 SHISA7A6NL88 538 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 SOBPA7XYQ1 873 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 DPYSL4O14531 572 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 GALR2O43603 387 aaPredicted RBP13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 CD72P21854 359 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 DDX6P26196 483 aaKnown RBP eCLIP13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 PLA2G5P39877 138 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 MXI1P50539 228 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 FCHO2Q0JRZ9 810 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 CBWD6Q4V339 395 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 DCAF17Q5H9S7 520 aaPredicted RBP13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 CBWD3Q5JTY5 395 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 CBWD5Q5RIA9 395 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 CLEC17AQ6ZS10 378 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 DENND5BQ6ZUT9 1274 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 YAF2Q8IY57 180 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 FUKQ8N0W3 1084 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 C12orf29Q8N999 325 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 CCDC150Q8NCX0 1101 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 USP13Q92995 863 aaPredicted RBP13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 TATDN2Q93075 761 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 FAM122AQ96E09 287 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 CYP2S1Q96SQ9 504 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 KCNK16Q96T55 309 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 NIF3L1Q9GZT8 377 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 CYP3A43Q9HB55 503 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 TRPV5Q9NQA5 729 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 RAB20Q9NX57 234 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 OBP2AQ9NY56 170 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 KIAA1468Q9P260 1216 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 CTNND2Q9UQB3 1225 aa13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 MTF2Q9Y483 593 aaPredicted RBP13.55□□□□□ -0.24
PRPF40A-203ENST00000448428 ARNTLO00327 626 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 CHADO15335 359 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 DCNP07585 359 aaKnown RBP13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 CCDC130P13994 396 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 STX17P56962 302 aa13.54□□□□□ -0.24
PRPF40A-203ENST00000448428 NHLH1Q02575 133 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms