RNA–Protein interactions for RNA: ENST00000389980.7

SPTBN1-203, Transcript of spectrin beta, non-erythrocytic 1, humanhuman

TSL 1 (best)

Gene SPTBN1, Length 2,164 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTBN1-203ENST00000389980 RSPH1Q8WYR4 309 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 APBB2Q92870 758 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 CASD1Q96PB1 797 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 RTP3Q9BQQ7 232 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 SYT15Q9BQS2 421 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 AP1M1Q9BXS5 423 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 B3GNT5Q9BYG0 378 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 PARD6BQ9BYG5 372 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 C11orf49Q9H6J7 331 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 ANKZF1Q9H8Y5 726 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 LRFN2Q9ULH4 789 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 MYBPHLA2RUH7 354 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 MIF4GDA9UHW6 222 aaKnown RBP12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 CES2O00748 559 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 BEST1O76090 585 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 UPP2O95045 317 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 FGGP02679 453 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 CXCL10P02778 98 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 PYGMP11217 842 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 ODC1P11926 461 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 ITGB8P26012 769 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 CTNNA1P35221 906 aaKnown RBP12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 LHX1P48742 406 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 ZNF268Q14587 947 aaPredicted RBP12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 TAF5Q15542 800 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 FAM102AQ5T9C2 384 aaPredicted RBP12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 C1orf53Q5VUE5 145 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.86□□□□□ -0.356e-15■■■■■ 39.2
SPTBN1-203ENST00000389980 ZNF572Q7Z3I7 529 aaPredicted RBP12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 SCUBE3Q8IX30 993 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 TMEM86AQ8N2M4 240 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 MSANTD4Q8NCY6 345 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 VWCEQ96DN2 955 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 MCRS1Q96EZ8 462 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 RNPC3Q96LT9 517 aaKnown RBP12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 UROC1Q96N76 676 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 FAM193BQ96PV7 902 aaPredicted RBP12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 MIS12Q9H081 205 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 PLEKHA4Q9H4M7 779 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 IP6K2Q9UHH9 426 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 PCDHA3Q9Y5H8 950 aa12.86□□□□□ -0.35
SPTBN1-203ENST00000389980 FNDC1Q4ZHG4 1894 aaPredicted RBP12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 SIGLEC16A6NMB1 481 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 M0QZQ0 153 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 PGRMC1O00264 195 aaKnown RBP12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 CLTBP09497 229 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 CTNNA2P26232 953 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 CTCFP49711 727 aaPredicted RBP12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 BCAT1P54687 386 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 BCAR1P56945 870 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 BST2Q10589 180 aaKnown RBP12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 TERF2Q15554 542 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 PKN2Q16513 984 aaKnown RBP12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 KRT222Q8N1A0 295 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 RASGEF1CQ8N431 466 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 GPR161Q8N6U8 529 aaKnown RBP12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 ACTRT1Q8TDG2 376 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 CLEC4CQ8WTT0 213 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 TMEM209Q96SK2 561 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 HNRNPABQ99729 332 aaKnown RBP12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.85□□□□□ -0.358e-12■■■■□ 19.9
SPTBN1-203ENST00000389980 MED10Q9BTT4 135 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 RHOBTB2Q9BYZ6 727 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 CARD9Q9H257 536 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 ELAC1Q9H777 363 aaKnown RBP12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 RNF14Q9UBS8 474 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 NR2E1Q9Y466 385 aa12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.85□□□□□ -0.35
SPTBN1-203ENST00000389980 LCP1P13796 627 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 PBX3P40426 434 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 SLC1A1P43005 524 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 ATP13A4Q4VNC1 1196 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 CRIPAKQ8N1N5 446 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 PCED1BQ96HM7 432 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 RPGRIP1Q96KN7 1286 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 PNKPQ96T60 521 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 SLC4A5Q9BY07 1137 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 NRDE2Q9H7Z3 1164 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 PRDM5Q9NQX1 630 aaPredicted RBP12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 FAM53CQ9NYF3 392 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 WDR35Q9P2L0 1181 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 KANSL3Q9P2N6 904 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 VWA8A3KMH1 1905 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 TBKBP1A7MCY6 615 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 PAPSS1O43252 624 aaPredicted RBP12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 FAM163BP0C2L3 166 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 PSMA2P25787 234 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 GSCP56915 257 aaPredicted RBP12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 TXNRD3NBQ6F5E7 133 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 TRNP1Q6NT89 227 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 CC2D1AQ6P1N0 951 aaPredicted RBP12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 TMCO2Q7Z6W1 182 aaPredicted RBP12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 TMEM110Q86TL2 294 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 HDAC7Q8WUI4 952 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 SUSD3Q96L08 255 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 LRRC1Q9BTT6 524 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 TMEM30AQ9NV96 361 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 KLHL11Q9NVR0 708 aa12.84□□□□□ -0.35
SPTBN1-203ENST00000389980 TRIM43BA6NCK2 446 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms