RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 OSGEPQ9NPF4 335 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 VPS45Q9NRW7 570 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 DDX28Q9NUL7 540 aaKnown RBP7.64□□□□□ -1.19
VPS13A-202ENST00000357409 AMPD1P23109 780 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 KPNA2P52292 529 aaKnown RBP7.64□□□□□ -1.19
VPS13A-202ENST00000357409 MYL6P60660 151 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 CSNK2BP67870 215 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 POLD3Q15054 466 aaPredicted RBP7.64□□□□□ -1.19
VPS13A-202ENST00000357409 ARNTL2Q8WYA1 636 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 CBWD1Q9BRT8 395 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 NUP153P49790 1475 aaKnown RBP7.64□□□□□ -1.19
VPS13A-202ENST00000357409 F5H5T6 163 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 STRNO43815 780 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 STAG3L1P0CL83 205 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 CRADDP78560 199 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 ACVR2BQ13705 512 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 ZBTB46Q86UZ6 589 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 RNPC3Q96LT9 517 aaKnown RBP7.64□□□□□ -1.19
VPS13A-202ENST00000357409 OMDQ99983 421 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 ACAT2Q9BWD1 397 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 CYP26B1Q9NR63 512 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 PODXLO00592 558 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 STAU1O95793 577 aaKnown RBP7.64□□□□□ -1.19
VPS13A-202ENST00000357409 TCF3P15923 654 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 GPD1P21695 349 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 FSTL1Q12841 308 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 TUBB2AQ13885 445 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 CAPRIN2Q6IMN6 1127 aaKnown RBP7.64□□□□□ -1.19
VPS13A-202ENST00000357409 INTS5Q6P9B9 1019 aaKnown RBP7.64□□□□□ -1.19
VPS13A-202ENST00000357409 MB21D2Q8IYB1 491 aaPredicted RBP7.64□□□□□ -1.19
VPS13A-202ENST00000357409 C7orf61Q8IZ16 206 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 TUBB2BQ9BVA1 445 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 ASPSCR1Q9BZE9 553 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 ASCC2Q9H1I8 757 aaPredicted RBP7.64□□□□□ -1.19
VPS13A-202ENST00000357409 SH3GLB2Q9NR46 395 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 AOX1Q06278 1338 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 UGGT2Q9NYU1 1516 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 CCNT2O60583 730 aaKnown RBP7.64□□□□□ -1.19
VPS13A-202ENST00000357409 AMD1P17707 334 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 MAXP61244 160 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 SGSM1Q2NKQ1 1148 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 RAP1GAP2Q684P5 730 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 SLC47A2Q86VL8 602 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 IGDCC4Q8TDY8 1250 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 USP13Q92995 863 aaPredicted RBP7.64□□□□□ -1.19
VPS13A-202ENST00000357409 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.64□□□□□ -1.19
VPS13A-202ENST00000357409 H0YC42 278 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 RHOAP61586 193 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 SKOR1P84550 965 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 NRSN1Q8IZ57 195 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 SPATA6LQ8N4H0 392 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 SERPINI1Q99574 410 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.64□□□□□ -1.191e-6■□□□□ 10.9
VPS13A-202ENST00000357409 COPS7BQ9H9Q2 264 aaPredicted RBP7.64□□□□□ -1.19
VPS13A-202ENST00000357409 INTS13Q9NVM9 706 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 SPATA31A1Q5TZJ5 1347 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 CCL16O15467 120 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 RBP3P10745 1247 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 HERVK_113P62684 666 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 FBXO48Q5FWF7 155 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 PPM1LQ5SGD2 360 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 IQCDQ96DY2 449 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 B3GALT6Q96L58 329 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 ROGDIQ9GZN7 287 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 IKZF4Q9H2S9 585 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 HERC5Q9UII4 1024 aaKnown RBP7.64□□□□□ -1.19
VPS13A-202ENST00000357409 RTN2O75298 545 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 INSRRP14616 1297 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 PBX3P40426 434 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 FBXO38Q6PIJ6 1188 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 IL17RAQ96F46 866 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 CGRRF1Q99675 332 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 CUEDC2Q9H467 287 aa7.64□□□□□ -1.19
VPS13A-202ENST00000357409 RRP15Q9Y3B9 282 aaKnown RBP7.64□□□□□ -1.19
VPS13A-202ENST00000357409 FMR1NBQ8N0W7 255 aaPredicted RBP7.63□□□□□ -1.19
VPS13A-202ENST00000357409 FAM96AQ9H5X1 160 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 FBXO2Q9UK22 296 aaPredicted RBP7.63□□□□□ -1.19
VPS13A-202ENST00000357409 RNF112Q9ULX5 631 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 KRT87PA6NCN2 255 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 TLL1O43897 1013 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 TBXAS1P24557 533 aaPredicted RBP7.63□□□□□ -1.19
VPS13A-202ENST00000357409 LIFRP42702 1097 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 CCR4P51679 360 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 TKTL1P51854 596 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 DNAJC3Q13217 504 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 DNAJA3Q96EY1 480 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 TPD52L3Q96J77 140 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 EIF3CQ99613 913 aaKnown RBP7.63□□□□□ -1.19
VPS13A-202ENST00000357409 SPATA16Q9BXB7 569 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 ZDHHC6Q9H6R6 413 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 PDGFCQ9NRA1 345 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 CXCL14O95715 111 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 HSPA1AP0DMV8 641 aaKnown RBP7.63□□□□□ -1.19
VPS13A-202ENST00000357409 HSPA1BP0DMV9 641 aaKnown RBP7.63□□□□□ -1.19
VPS13A-202ENST00000357409 UMPSP11172 480 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 FLT3P36888 993 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 PLOD1Q02809 727 aaPredicted RBP7.63□□□□□ -1.19
VPS13A-202ENST00000357409 IQSEC1Q6DN90 963 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 NOTUMQ6P988 496 aa7.63□□□□□ -1.19
VPS13A-202ENST00000357409 RNF44Q7L0R7 432 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms