RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ZDBF2Q9HCK1 2354 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 KIF26AQ9ULI4 1882 aaPredicted RBP16.85■□□□□ 0.29
CLN3-201ENST00000333496 KRBA1A5PL33 1030 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 TADA3O75528 432 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 CDC25CP30307 473 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 GRIK1P39086 918 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 VIPR2P41587 438 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 NLRP12P59046 1061 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 INCA1Q0VD86 236 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 ORC1Q13415 861 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 GPR158Q5T848 1215 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 GPIHBP1Q8IV16 184 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 CRYBG2Q8N1P7 616 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 FBXL6Q8N531 539 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 GPT2Q8TD30 523 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 TATDN2Q93075 761 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 TRMT2BQ96GJ1 504 aaKnown RBP16.85■□□□□ 0.29
CLN3-201ENST00000333496 TWNKQ96RR1 684 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 SRRTQ9BXP5 876 aaKnown RBP16.85■□□□□ 0.29
CLN3-201ENST00000333496 NIF3L1Q9GZT8 377 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 NUP62CLQ9H1M0 184 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 SLITRK6Q9H5Y7 841 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 HELZP42694 1942 aaKnown RBP16.84■□□□□ 0.29
CLN3-201ENST00000333496 F8VP50 259 aa16.84■□□□□ 0.29
CLN3-201ENST00000333496 CCDC40Q4G0X9 1142 aa16.84■□□□□ 0.29
CLN3-201ENST00000333496 VITQ6UXI7 678 aa16.84■□□□□ 0.29
CLN3-201ENST00000333496 UNC93AQ86WB7 457 aa16.84■□□□□ 0.29
CLN3-201ENST00000333496 ARID3BQ8IVW6 561 aaPredicted RBP16.84■□□□□ 0.29
CLN3-201ENST00000333496 WHAMMQ8TF30 809 aa16.84■□□□□ 0.29
CLN3-201ENST00000333496 RSPRY1Q96DX4 576 aa16.84■□□□□ 0.29
CLN3-201ENST00000333496 TNIP3Q96KP6 325 aa16.84■□□□□ 0.29
CLN3-201ENST00000333496 SPATA17Q96L03 361 aa16.84■□□□□ 0.29
CLN3-201ENST00000333496 SLC46A2Q9BY10 475 aa16.84■□□□□ 0.29
CLN3-201ENST00000333496 CYP3A43Q9HB55 503 aa16.84■□□□□ 0.29
CLN3-201ENST00000333496 NPR3P17342 541 aa16.83■□□□□ 0.28
CLN3-201ENST00000333496 FMO5P49326 533 aa16.83■□□□□ 0.28
CLN3-201ENST00000333496 MARSP56192 900 aaKnown RBP16.83■□□□□ 0.28
CLN3-201ENST00000333496 USP46P62068 366 aa16.83■□□□□ 0.28
CLN3-201ENST00000333496 FUKQ8N0W3 1084 aa16.83■□□□□ 0.28
CLN3-201ENST00000333496 SIX5Q8N196 739 aa16.83■□□□□ 0.28
CLN3-201ENST00000333496 C12orf29Q8N999 325 aa16.83■□□□□ 0.28
CLN3-201ENST00000333496 ELOVL4Q9GZR5 314 aa16.83■□□□□ 0.28
CLN3-201ENST00000333496 TASP1Q9H6P5 420 aa16.83■□□□□ 0.28
CLN3-201ENST00000333496 RWDD2AQ9UIY3 292 aa16.83■□□□□ 0.28
CLN3-201ENST00000333496 FBXL21Q9UKT6 434 aa16.83■□□□□ 0.28
CLN3-201ENST00000333496 CA14Q9ULX7 337 aa16.83■□□□□ 0.28
CLN3-201ENST00000333496 TRIM66O15016 1216 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 CILPO75339 1184 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 CD58P19256 250 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 VCPP55072 806 aaKnown RBP16.82■□□□□ 0.28
CLN3-201ENST00000333496 GRM2Q14416 872 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 ARHGAP15Q53QZ3 475 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 DENND5BQ6ZUT9 1274 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 FAM35AQ86V20 835 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 TRIM59Q8IWR1 403 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 CCDC150Q8NCX0 1101 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 FAXDC2Q96IV6 333 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 C8orf48Q96LL4 319 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 CEP295NLQ96MC4 621 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 LRRC3BQ96PB8 259 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 GCNAQ96QF7 691 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 KCNK16Q96T55 309 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 ARID3AQ99856 593 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 MIA3Q5JRA6 1907 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 MYO16Q9Y6X6 1858 aa16.82■□□□□ 0.28
CLN3-201ENST00000333496 HEPACAM2A8MVW5 462 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 PRAMEF12O95522 483 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 CCDC130P13994 396 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 CWF19L1Q69YN2 538 aaKnown RBP16.81■□□□□ 0.28
CLN3-201ENST00000333496 TXNDC8Q6A555 127 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 MFSD6LQ8IWD5 586 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 MAB21L3Q8N8X9 362 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 MLKLQ8NB16 471 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 UXTQ9UBK9 157 aaPredicted RBP16.81■□□□□ 0.28
CLN3-201ENST00000333496 PMM2O15305 246 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 BEST1O76090 585 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 GNA14O95837 355 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 PSMC3P17980 439 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 WEE1P30291 646 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 DPCR1Q3MIW9 517 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 WDR44Q5JSH3 913 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 SUGP1Q8IWZ8 645 aaKnown RBP16.81■□□□□ 0.28
CLN3-201ENST00000333496 ZMIZ2Q8NF64 920 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 LMO3Q8TAP4 145 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 SLC2A14Q8TDB8 520 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 MED10Q9BTT4 135 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 TTLL2Q9BWV7 592 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 NT5C1AQ9BXI3 368 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 ARHGEF3Q9NR81 526 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 FAM49BQ9NUQ9 324 aa16.81■□□□□ 0.28
CLN3-201ENST00000333496 ANXA13P27216 316 aa16.8■□□□□ 0.28
CLN3-201ENST00000333496 AVPR2P30518 371 aa16.8■□□□□ 0.28
CLN3-201ENST00000333496 KCNH2Q12809 1159 aa16.8■□□□□ 0.28
CLN3-201ENST00000333496 ZNF394Q53GI3 561 aa16.8■□□□□ 0.28
CLN3-201ENST00000333496 IRF2BP1Q8IU81 584 aa16.8■□□□□ 0.28
CLN3-201ENST00000333496 CMTM8Q8IZV2 173 aa16.8■□□□□ 0.28
CLN3-201ENST00000333496 DEPDC1BQ8WUY9 529 aa16.8■□□□□ 0.28
CLN3-201ENST00000333496 SMARCD1Q96GM5 515 aa16.8■□□□□ 0.28
CLN3-201ENST00000333496 SMOQ99835 787 aa16.8■□□□□ 0.28
CLN3-201ENST00000333496 TRMT61BQ9BVS5 477 aaKnown RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms