RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 USP8P40818 1118 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 ZNF132P52740 706 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 PLD1Q13393 1074 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 NR1I3Q14994 352 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 PUS10Q3MIT2 529 aaKnown RBP13.54□□□□□ -0.24
SS18-202ENST00000269138 VSTM1Q6UX27 236 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 CYP26C1Q6V0L0 522 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 ENOSF1Q7L5Y1 443 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 DNAJB7Q7Z6W7 309 aaPredicted RBP13.54□□□□□ -0.24
SS18-202ENST00000269138 SHC3Q92529 594 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 JAKMIP2Q96AA8 810 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 ZNF512Q96ME7 567 aaPredicted RBP13.54□□□□□ -0.24
SS18-202ENST00000269138 PCMTD1Q96MG8 357 aaPredicted RBP13.54□□□□□ -0.24
SS18-202ENST00000269138 KCNK16Q96T55 309 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 SMOQ99835 787 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 NAA15Q9BXJ9 866 aaKnown RBP13.54□□□□□ -0.24
SS18-202ENST00000269138 LRRC3Q9BY71 257 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 ZNF334Q9HCZ1 680 aaPredicted RBP13.54□□□□□ -0.24
SS18-202ENST00000269138 WDR6Q9NNW5 1121 aaKnown RBP13.54□□□□□ -0.24
SS18-202ENST00000269138 ACP6Q9NPH0 428 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 PLCB1Q9NQ66 1216 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 KRT82Q9NSB4 513 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 AP1G2O75843 785 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 RHOP08100 348 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 PTPN2P17706 415 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 SP100P23497 879 aaPredicted RBP13.54□□□□□ -0.24
SS18-202ENST00000269138 SSTR3P32745 418 aaPredicted RBP13.54□□□□□ -0.24
SS18-202ENST00000269138 CCR2P41597 374 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 RPL10AP62906 217 aaKnown RBP13.54□□□□□ -0.24
SS18-202ENST00000269138 RAPGEF1Q13905 1077 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 DRAP1Q14919 205 aaPredicted RBP13.54□□□□□ -0.24
SS18-202ENST00000269138 SLC5A9Q2M3M2 681 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 FILIP1LQ4L180 1135 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 ELMOD1Q8N336 334 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 ZMIZ2Q8NF64 920 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 ITFG1Q8TB96 612 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 PSMG2Q969U7 264 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 TCEAL4Q96EI5 215 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 GPR88Q9GZN0 384 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 RBSNQ9H1K0 784 aa13.54□□□□□ -0.24
SS18-202ENST00000269138 CLUHO75153 1309 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 DOCK6Q96HP0 2047 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 SLC38A8A6NNN8 435 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 PAEPP09466 180 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 VDRP11473 427 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 MYL4P12829 197 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 HMGA1P17096 107 aaKnown RBP13.53□□□□□ -0.24
SS18-202ENST00000269138 BRD2P25440 801 aaKnown RBP13.53□□□□□ -0.24
SS18-202ENST00000269138 UBASH3AP57075 661 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 MAP3K7CLP57077 242 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 POLR2FP61218 127 aaKnown RBP13.53□□□□□ -0.24
SS18-202ENST00000269138 VEPH1Q14D04 833 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 PABPC1LQ4VXU2 614 aaKnown RBP13.53□□□□□ -0.24
SS18-202ENST00000269138 SGO2Q562F6 1265 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 ARHGAP17Q68EM7 881 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 TMC8Q8IU68 726 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 GPIHBP1Q8IV16 184 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 SMARCD1Q96GM5 515 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 C8orf48Q96LL4 319 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 FAM81BQ96LP2 452 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 NECTIN4Q96NY8 510 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 DNAI2Q9GZS0 605 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 NLRC4Q9NPP4 1024 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 IFNKQ9P0W0 207 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 ASB3Q9Y575 518 aa13.53□□□□□ -0.24
SS18-202ENST00000269138 ATP8B3O60423 1300 aa13.52□□□□□ -0.24
SS18-202ENST00000269138 C2orf16Q68DN1 1984 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 O00370 1275 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 TRIM66O15016 1216 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 CYP26A1O43174 497 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 MOSPD3O75425 235 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 FAM200BP0CF97 657 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 GJA1P17302 382 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 TRIM21P19474 475 aaKnown RBP13.52□□□□□ -0.25
SS18-202ENST00000269138 FSHRP23945 695 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 USP46P62068 366 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 GOLGA7BQ2TAP0 167 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 PRSS36Q5K4E3 855 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 POTEHQ6S545 545 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 CLEC20AQ6ZU45 233 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 ITIH5Q86UX2 942 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 TTC30AQ86WT1 665 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 NEK11Q8NG66 645 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 ING5Q8WYH8 240 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 RPGRIP1Q96KN7 1286 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 SPATA17Q96L03 361 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 PHF7Q9BWX1 381 aaPredicted RBP13.52□□□□□ -0.25
SS18-202ENST00000269138 STK33Q9BYT3 514 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 CSNK1G1Q9HCP0 422 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 DMAP1Q9NPF5 467 aaPredicted RBP13.52□□□□□ -0.25
SS18-202ENST00000269138 KIAA1257Q9ULG3 409 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 MAGED2Q9UNF1 606 aaPredicted RBP13.52□□□□□ -0.25
SS18-202ENST00000269138 FAM50BQ9Y247 325 aa13.52□□□□□ -0.25
SS18-202ENST00000269138 TULP2O00295 520 aa13.51□□□□□ -0.25
SS18-202ENST00000269138 CSH1P0DML2 217 aa13.51□□□□□ -0.25
SS18-202ENST00000269138 CSH2P0DML3 217 aa13.51□□□□□ -0.25
SS18-202ENST00000269138 CEBPBP17676 345 aa13.51□□□□□ -0.25
SS18-202ENST00000269138 ANXA13P27216 316 aa13.51□□□□□ -0.25
SS18-202ENST00000269138 CLCN1P35523 988 aa13.51□□□□□ -0.25
SS18-202ENST00000269138 EPHA5P54756 1037 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms