RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 VPS39Q96JC1 886 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 TBC1D23Q9NUY8 699 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 PCDHAC2Q9Y5I4 1007 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 APOL1O14791 398 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 PPATQ06203 517 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 TTLL4Q14679 1199 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 KLC3Q6P597 504 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 C4orf50Q6ZRC1 276 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 CDKL3Q8IVW4 592 aaPredicted RBP12.03□□□□□ -0.48
VPS33A-201ENST00000267199 PRELID2Q8N945 189 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 RDM1Q8NG50 284 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 PPCSQ9HAB8 311 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 GRIN2DO15399 1336 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 PSTPIP1O43586 416 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 HOXA10P31260 410 aaPredicted RBP12.03□□□□□ -0.48
VPS33A-201ENST00000267199 EN1Q05925 392 aaPredicted RBP12.03□□□□□ -0.48
VPS33A-201ENST00000267199 ACBD5Q5T8D3 534 aaPredicted RBP12.03□□□□□ -0.48
VPS33A-201ENST00000267199 RWDD4Q6NW29 188 aaKnown RBP12.03□□□□□ -0.48
VPS33A-201ENST00000267199 SAMD7Q7Z3H4 446 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 ZNF75CPQ92670 426 aaPredicted RBP12.03□□□□□ -0.48
VPS33A-201ENST00000267199 GPRASP2Q96D09 838 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 MPP4Q96JB8 637 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 IDI2Q9BXS1 227 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 DEFB129Q9H1M3 183 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 AGO4Q9HCK5 861 aaKnown RBP12.03□□□□□ -0.48
VPS33A-201ENST00000267199 SNX9Q9Y5X1 595 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 SNX5Q9Y5X3 404 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 EME2A4GXA9 379 aaPredicted RBP12.03□□□□□ -0.48
VPS33A-201ENST00000267199 SRRM3A6NNA2 597 aaPredicted RBP12.03□□□□□ -0.48
VPS33A-201ENST00000267199 ZSCAN5DPP0CG00 497 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 SPATA31C1P0DKV0 1188 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 TXNP10599 105 aaKnown RBP12.03□□□□□ -0.48
VPS33A-201ENST00000267199 GARTP22102 1010 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 MXD4Q14582 209 aaPredicted RBP12.03□□□□□ -0.48
VPS33A-201ENST00000267199 TTC39BQ5VTQ0 682 aaPredicted RBP12.03□□□□□ -0.48
VPS33A-201ENST00000267199 CYGBQ8WWM9 190 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 ADNPQ9H2P0 1102 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 SUN2Q9UH99 717 aa12.03□□□□□ -0.48
VPS33A-201ENST00000267199 SPDYE16A6NNV3 312 aaPredicted RBP12.02□□□□□ -0.48
VPS33A-201ENST00000267199 HUS1O60921 280 aa12.02□□□□□ -0.48
VPS33A-201ENST00000267199 ETS2P15036 469 aa12.02□□□□□ -0.48
VPS33A-201ENST00000267199 GCLCP48506 637 aaPredicted RBP12.02□□□□□ -0.48
VPS33A-201ENST00000267199 OTUD4Q01804 1114 aaKnown RBP12.02□□□□□ -0.48
VPS33A-201ENST00000267199 CLEC16AQ2KHT3 1053 aa12.02□□□□□ -0.48
VPS33A-201ENST00000267199 SPDYE2Q495Y8 402 aa12.02□□□□□ -0.48
VPS33A-201ENST00000267199 CCDC92Q53HC0 331 aaPredicted RBP12.02□□□□□ -0.48
VPS33A-201ENST00000267199 XRRA1Q6P2D8 792 aa12.02□□□□□ -0.48
VPS33A-201ENST00000267199 C15orf52Q6ZUT6 534 aaKnown RBP12.02□□□□□ -0.48
VPS33A-201ENST00000267199 APLFQ8IW19 511 aaPredicted RBP12.02□□□□□ -0.48
VPS33A-201ENST00000267199 MFN1Q8IWA4 741 aa12.02□□□□□ -0.48
VPS33A-201ENST00000267199 EIF1ADQ8N9N8 165 aaKnown RBP12.02□□□□□ -0.48
VPS33A-201ENST00000267199 MKL1Q969V6 931 aa12.02□□□□□ -0.48
VPS33A-201ENST00000267199 MYOZ2Q9NPC6 264 aa12.02□□□□□ -0.48
VPS33A-201ENST00000267199 CHCHD3Q9NX63 227 aaKnown RBP12.02□□□□□ -0.48
VPS33A-201ENST00000267199 IPO11Q9UI26 975 aaKnown RBP12.02□□□□□ -0.48
VPS33A-201ENST00000267199 ZNF229Q9UJW7 825 aa12.02□□□□□ -0.48
VPS33A-201ENST00000267199 PPP1R11O60927 126 aaPredicted RBP12.02□□□□□ -0.49
VPS33A-201ENST00000267199 VIL1P09327 827 aaKnown RBP12.02□□□□□ -0.49
VPS33A-201ENST00000267199 RPA3P35244 121 aaPredicted RBP12.02□□□□□ -0.49
VPS33A-201ENST00000267199 SERPINB5P36952 375 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 ARL13BQ3SXY8 428 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 TCHHL1Q5QJ38 904 aaPredicted RBP12.02□□□□□ -0.49
VPS33A-201ENST00000267199 KDELC2Q7Z4H8 507 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 APOBEC3FQ8IUX4 373 aaKnown RBP12.02□□□□□ -0.49
VPS33A-201ENST00000267199 CCDC117Q8IWD4 279 aaPredicted RBP12.02□□□□□ -0.49
VPS33A-201ENST00000267199 BEST2Q8NFU1 509 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 UBA3Q8TBC4 463 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 ZNF184Q99676 751 aaPredicted RBP12.02□□□□□ -0.49
VPS33A-201ENST00000267199 FAM198AQ9UFP1 575 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 CYP3A7-CYP3A51PA0A087WV96 503 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 GH1P01241 217 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 OATP04181 439 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 TAC1P20366 129 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 CYP3A7P24462 503 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 TMTC4Q5T4D3 741 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 POTEAQ6S8J7 498 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 MCOLN2Q8IZK6 566 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 RNF148Q8N7C7 305 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 EPS8L1Q8TE68 723 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 SKA2Q8WVK7 121 aaPredicted RBP12.02□□□□□ -0.49
VPS33A-201ENST00000267199 ALG3Q92685 438 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 NCLNQ969V3 563 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 TRIM15Q9C019 465 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 DCLK3Q9C098 648 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 MTMR12Q9C0I1 747 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 IL1RL2Q9HB29 575 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 GRID1Q9ULK0 1009 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 DNAJC16Q9Y2G8 782 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 TSC22D4Q9Y3Q8 395 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 PCDHA3Q9Y5H8 950 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 V9GYQ6 96 aa12.02□□□□□ -0.49
VPS33A-201ENST00000267199 PIK3CDO00329 1044 aa12.01□□□□□ -0.49
VPS33A-201ENST00000267199 ZC3H11AO75152 810 aaKnown RBP eCLIP12.01□□□□□ -0.49
VPS33A-201ENST00000267199 NOL4O94818 638 aa12.01□□□□□ -0.49
VPS33A-201ENST00000267199 CALCAP01258 141 aa12.01□□□□□ -0.49
VPS33A-201ENST00000267199 FECHP22830 423 aa12.01□□□□□ -0.49
VPS33A-201ENST00000267199 CHKAP35790 457 aa12.01□□□□□ -0.49
VPS33A-201ENST00000267199 ORC1Q13415 861 aa12.01□□□□□ -0.49
VPS33A-201ENST00000267199 OASLQ15646 514 aaKnown RBP12.01□□□□□ -0.49
VPS33A-201ENST00000267199 DACT2Q5SW24 774 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms