RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 RNF10Q8N5U6 811 aaKnown RBP11.12□□□□□ -0.63
VPS11-208ENST00000621676 GLIS1Q8NBF1 620 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 NEUROG2Q9H2A3 272 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 ABI2Q9NYB9 513 aaPredicted RBP11.12□□□□□ -0.63
VPS11-208ENST00000621676 SMIM35A0A1B0GVV1 85 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 HGSO14964 777 aaPredicted RBP11.12□□□□□ -0.63
VPS11-208ENST00000621676 PJA2O43164 708 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 CREB3O43889 395 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 RARAP10276 462 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 CASP8Q14790 479 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 OTOP2Q7RTS6 562 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 ZNF467Q7Z7K2 595 aaPredicted RBP11.12□□□□□ -0.63
VPS11-208ENST00000621676 TTC30AQ86WT1 665 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 PYROXD2Q8N2H3 581 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 UBL4BQ8N7F7 174 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 CASKIN2Q8WXE0 1202 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 AUTS2Q8WXX7 1259 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 LRRC4CQ9HCJ2 640 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 KCNG1Q9UIX4 513 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 P4HA2O15460 535 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 UNGP13051 313 aaPredicted RBP11.12□□□□□ -0.63
VPS11-208ENST00000621676 PROZP22891 400 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 TBXAS1P24557 533 aaPredicted RBP11.12□□□□□ -0.63
VPS11-208ENST00000621676 TKTP29401 623 aaKnown RBP11.12□□□□□ -0.63
VPS11-208ENST00000621676 CACNA2D1P54289 1103 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 UBXN11Q5T124 520 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 ADGRF2Q8IZF7 708 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 RNF34Q969K3 372 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 SENP8Q96LD8 212 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 TMEM121Q9BTD3 319 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 KATNAL1Q9BW62 490 aa11.12□□□□□ -0.63
VPS11-208ENST00000621676 COL6A3P12111 3177 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 REV3LO60673 3130 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 RBM47A0AV96 593 aaKnown RBP11.11□□□□□ -0.63
VPS11-208ENST00000621676 GOLGA8CPA6NN73 597 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 ZBBXA8MT70 800 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 CAPN9O14815 690 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 GAS2O43903 313 aaKnown RBP11.11□□□□□ -0.63
VPS11-208ENST00000621676 ADAMTS4O75173 837 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 ZRANB2O95218 330 aaKnown RBP eCLIP11.11□□□□□ -0.63
VPS11-208ENST00000621676 LCA5LO95447 670 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 HMGCRP04035 888 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 F7P08709 466 aaPredicted RBP11.11□□□□□ -0.63
VPS11-208ENST00000621676 SYN1P17600 705 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 OAS2P29728 719 aaKnown RBP11.11□□□□□ -0.63
VPS11-208ENST00000621676 PPP2R5DQ14738 602 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 NFIL3Q16649 462 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 OSTM1Q86WC4 334 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 TSEN2Q8NCE0 465 aaKnown RBP11.11□□□□□ -0.63
VPS11-208ENST00000621676 SCAMP5Q8TAC9 235 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 IQCDQ96DY2 449 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 ERLEC1Q96DZ1 483 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 ISCUQ9H1K1 167 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 TBK1Q9UHD2 729 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 USP17L7P0C7H9 530 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 IL1R2P27930 398 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 CRYBB1P53674 252 aaPredicted RBP11.11□□□□□ -0.63
VPS11-208ENST00000621676 ADIGQ0VDE8 80 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 LPIN1Q14693 890 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 TTC27Q6P3X3 843 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 CCDC137Q6PK04 289 aaKnown RBP11.11□□□□□ -0.63
VPS11-208ENST00000621676 HFE2Q6ZVN8 426 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 KCTD6Q8NC69 237 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 RXFP2Q8WXD0 754 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.11□□□□□ -0.63
VPS11-208ENST00000621676 ZNF518BQ9C0D4 1074 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 MLXIPLQ9NP71 852 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 SEPT10Q9P0V9 454 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 A0A1W2PQ45 241 aaPredicted RBP11.11□□□□□ -0.63
VPS11-208ENST00000621676 A0A1W2PQY0 241 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 ANKRD65E5RJM6 399 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 H3BQF6 201 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 FKTNO75072 461 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 ACSL3O95573 720 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 HOXD10P28358 340 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 GPR15P49685 360 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 RWDD2BP57060 319 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 BPIFB4P59827 614 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 CCDC38Q502W7 563 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 TIGD5Q53EQ6 642 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 FAM183BPQ6ZVS7 135 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 RHOT2Q8IXI1 618 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 TTC9BQ8N6N2 239 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 ATAD1Q8NBU5 361 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 FEZF2Q8TBJ5 459 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 FAM193BQ96PV7 902 aaPredicted RBP11.11□□□□□ -0.63
VPS11-208ENST00000621676 SYT11Q9BT88 431 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 STIM2Q9P246 746 aa11.11□□□□□ -0.63
VPS11-208ENST00000621676 MYO18AQ92614 2054 aaKnown RBP11.1□□□□□ -0.63
VPS11-208ENST00000621676 PIGRP01833 764 aa11.1□□□□□ -0.63
VPS11-208ENST00000621676 CKBP12277 381 aa11.1□□□□□ -0.63
VPS11-208ENST00000621676 ADCY8P40145 1251 aa11.1□□□□□ -0.63
VPS11-208ENST00000621676 MBTPS1Q14703 1052 aa11.1□□□□□ -0.63
VPS11-208ENST00000621676 DDR2Q16832 855 aa11.1□□□□□ -0.63
VPS11-208ENST00000621676 LEKR1Q6ZMV7 388 aa11.1□□□□□ -0.63
VPS11-208ENST00000621676 EXOC8Q8IYI6 725 aa11.1□□□□□ -0.63
VPS11-208ENST00000621676 DEPDC1BQ8WUY9 529 aa11.1□□□□□ -0.63
VPS11-208ENST00000621676 SNX27Q96L92 541 aa11.1□□□□□ -0.63
VPS11-208ENST00000621676 DHX35Q9H5Z1 703 aaKnown RBP11.1□□□□□ -0.63
VPS11-208ENST00000621676 KCND1Q9NSA2 647 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms