RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 CGRRF1Q99675 332 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 MKNK1Q9BUB5 465 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 MFSD1Q9H3U5 465 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 KIAA1586Q9HCI6 787 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 ASAH2Q9NR71 780 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 DMAC2Q9NW81 257 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 NME7Q9Y5B8 376 aa12.36□□□□□ -0.43
LINC00539-204ENST00000608957 F5P12259 2224 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 SHISA7A6NL88 538 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 ZNF197O14709 1029 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 GABRDO14764 452 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 ECI2O75521 394 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 GNA14O95837 355 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 NR3C1P04150 777 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 DLATP10515 647 aaKnown RBP12.35□□□□□ -0.43
LINC00539-204ENST00000608957 HAPLN1P10915 354 aaPredicted RBP12.35□□□□□ -0.43
LINC00539-204ENST00000608957 AOC1P19801 751 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 NR2F2P24468 414 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 HOXD11P31277 338 aaPredicted RBP12.35□□□□□ -0.43
LINC00539-204ENST00000608957 GPR15P49685 360 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 CLCN5P51795 746 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 EPHB3P54753 998 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 SNRPFP62306 86 aaKnown RBP12.35□□□□□ -0.43
LINC00539-204ENST00000608957 SURF1Q15526 300 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 DUOXA2Q1HG44 320 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 IQCEQ6IPM2 695 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 TRAPPC11Q7Z392 1133 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 DNAJB7Q7Z6W7 309 aaPredicted RBP12.35□□□□□ -0.43
LINC00539-204ENST00000608957 DRC7Q8IY82 874 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 THEM5Q8N1Q8 247 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 KBTBD7Q8WVZ9 684 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 PSMG2Q969U7 264 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 RSPRY1Q96DX4 576 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 EEF2KMTQ96G04 330 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 NAP1L5Q96NT1 182 aaPredicted RBP12.35□□□□□ -0.43
LINC00539-204ENST00000608957 SEPT5Q99719 369 aaPredicted RBP12.35□□□□□ -0.43
LINC00539-204ENST00000608957 TBC1D17Q9HA65 648 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 IL21Q9HBE4 155 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 ARHGEF3Q9NR81 526 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 DDX43Q9NXZ2 648 aaKnown RBP12.35□□□□□ -0.43
LINC00539-204ENST00000608957 ABI2Q9NYB9 513 aaPredicted RBP12.35□□□□□ -0.43
LINC00539-204ENST00000608957 TAB2Q9NYJ8 693 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 CGNQ9P2M7 1197 aaKnown RBP12.35□□□□□ -0.43
LINC00539-204ENST00000608957 HSFX1Q9UBD0 423 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 SNX9Q9Y5X1 595 aa12.35□□□□□ -0.43
LINC00539-204ENST00000608957 A0A1W2PRU2 124 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 CETN3O15182 167 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 GALR2O43603 387 aaPredicted RBP12.34□□□□□ -0.43
LINC00539-204ENST00000608957 HUS1O60921 280 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 ATP2C2O75185 946 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 TNNC2P02585 160 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 PTMAP06454 111 aaKnown RBP12.34□□□□□ -0.43
LINC00539-204ENST00000608957 TPM2P07951 284 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 RPL13P26373 211 aaKnown RBP12.34□□□□□ -0.43
LINC00539-204ENST00000608957 VIPR2P41587 438 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 MTIF2P46199 727 aaKnown RBP12.34□□□□□ -0.43
LINC00539-204ENST00000608957 ALDH1A3P47895 512 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 PLD1Q13393 1074 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 MGAT5BQ3V5L5 792 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 CCDC40Q4G0X9 1142 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 INTS6LQ5JSJ4 861 aaKnown RBP12.34□□□□□ -0.43
LINC00539-204ENST00000608957 CYP4A22Q5TCH4 519 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 SDHAF4Q5VUM1 108 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 VITQ6UXI7 678 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 FILIP1Q7Z7B0 1213 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 CREBRFQ8IUR6 639 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 ADGRF2Q8IZF7 708 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 TOP6BLQ8N6T0 577 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 SPC24Q8NBT2 197 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 SPPL2BQ8TCT7 592 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 GIPC2Q8TF65 315 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 ELSPBP1Q96BH3 223 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 ELMO3Q96BJ8 720 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 CCDC127Q96BQ5 260 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 HPDLQ96IR7 371 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 PI4K2AQ9BTU6 479 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 FAM86C1Q9NVL1 165 aa12.34□□□□□ -0.43
LINC00539-204ENST00000608957 MYBPHLA2RUH7 354 aa12.33□□□□□ -0.44
LINC00539-204ENST00000608957 LRRC10BA6NIK2 292 aa12.33□□□□□ -0.44
LINC00539-204ENST00000608957 LRRIQ3A6PVS8 624 aaPredicted RBP12.33□□□□□ -0.44
LINC00539-204ENST00000608957 LGALS16A8MUM7 142 aa12.33□□□□□ -0.44
LINC00539-204ENST00000608957 GOLGA6L6A8MZA4 724 aa12.33□□□□□ -0.44
LINC00539-204ENST00000608957 SLC16A3O15427 465 aaKnown RBP12.33□□□□□ -0.44
LINC00539-204ENST00000608957 LRRN2O75325 713 aa12.33□□□□□ -0.44
LINC00539-204ENST00000608957 VNN1O95497 513 aa12.33□□□□□ -0.44
LINC00539-204ENST00000608957 EPB41P11171 864 aaKnown RBP12.33□□□□□ -0.44
LINC00539-204ENST00000608957 PRKCSHP14314 528 aaPredicted RBP12.33□□□□□ -0.44
LINC00539-204ENST00000608957 GLULP15104 373 aa12.33□□□□□ -0.44
LINC00539-204ENST00000608957 HMGA1P17096 107 aaKnown RBP12.33□□□□□ -0.44
LINC00539-204ENST00000608957 TNNI1P19237 187 aa12.33□□□□□ -0.44
LINC00539-204ENST00000608957 LMO2P25791 158 aa12.33□□□□□ -0.44
LINC00539-204ENST00000608957 PTPN5P54829 565 aa12.33□□□□□ -0.44
LINC00539-204ENST00000608957 MARSP56192 900 aaKnown RBP12.33□□□□□ -0.44
LINC00539-204ENST00000608957 STARD6P59095 220 aa12.33□□□□□ -0.44
LINC00539-204ENST00000608957 CYP4F8P98187 520 aa12.33□□□□□ -0.44
LINC00539-204ENST00000608957 ADAM9Q13443 819 aa12.33□□□□□ -0.44
LINC00539-204ENST00000608957 GRM2Q14416 872 aa12.33□□□□□ -0.44
LINC00539-204ENST00000608957 NR1I3Q14994 352 aa12.33□□□□□ -0.44
LINC00539-204ENST00000608957 MAN2A1Q16706 1144 aa12.33□□□□□ -0.44
LINC00539-204ENST00000608957 PHLDB3Q6NSJ2 640 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms