RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 KDM7AQ6ZMT4 941 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 SRLQ86TD4 932 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 TMEM199Q8N511 208 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 RSPH1Q8WYR4 309 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 DDX1Q92499 740 aaKnown RBP12.38□□□□□ -0.43
VRK3-223ENST00000601341 TRIM43Q96BQ3 446 aaPredicted RBP12.38□□□□□ -0.43
VRK3-223ENST00000601341 RAB17Q9H0T7 212 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 SDCBP2Q9H190 292 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 BARX2Q9UMQ3 279 aaPredicted RBP12.38□□□□□ -0.43
VRK3-223ENST00000601341 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.38□□□□□ -0.43
VRK3-223ENST00000601341 CASTOR2A6NHX0 329 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 SPTLC1O15269 473 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 EIF3HO15372 352 aaKnown RBP eCLIP12.38□□□□□ -0.43
VRK3-223ENST00000601341 BUB1BO60566 1050 aaPredicted RBP12.38□□□□□ -0.43
VRK3-223ENST00000601341 HUS1O60921 280 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 PAEPP09466 180 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 CHRNB2P17787 502 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 IRAK1P51617 712 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 CLCNKBP51801 687 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 SLC20A2Q08357 652 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 UPP1Q16831 310 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 MFSD5Q6N075 450 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 DPH6Q7L8W6 267 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 APPL2Q8NEU8 664 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 IFT81Q8WYA0 676 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 FAM129AQ9BZQ8 928 aa12.38□□□□□ -0.43
VRK3-223ENST00000601341 TRIP11Q15643 1979 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 FAM187AA6NFU0 413 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 GOLGA6L10A6NI86 522 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 DDX3YO15523 660 aaKnown RBP12.37□□□□□ -0.43
VRK3-223ENST00000601341 THAP12O43422 761 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 RTN2O75298 545 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 PFKMP08237 780 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 MMEP08473 750 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 FAM163BP0C2L3 166 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 ECHS1P30084 290 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 FMO1Q01740 532 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 RNASELQ05823 741 aaKnown RBP12.37□□□□□ -0.43
VRK3-223ENST00000601341 DHX34Q14147 1143 aaKnown RBP12.37□□□□□ -0.43
VRK3-223ENST00000601341 SOWAHAQ2M3V2 549 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 DNAJC21Q5F1R6 531 aaKnown RBP12.37□□□□□ -0.43
VRK3-223ENST00000601341 SPATS2Q86XZ4 545 aaKnown RBP12.37□□□□□ -0.43
VRK3-223ENST00000601341 NPAS4Q8IUM7 802 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 CRIPAKQ8N1N5 446 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 ARFGAP2Q8N6H7 521 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 PIK3R5Q8WYR1 880 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 RUNDC3BQ96NL0 473 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 DNAI2Q9GZS0 605 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 PRKAG2Q9UGJ0 569 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 KIAA1257Q9ULG3 409 aa12.37□□□□□ -0.43
VRK3-223ENST00000601341 UTP11Q9Y3A2 253 aaKnown RBP12.37□□□□□ -0.43
VRK3-223ENST00000601341 ATXN2Q99700 1313 aaKnown RBP12.37□□□□□ -0.43
VRK3-223ENST00000601341 TANC1Q9C0D5 1861 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 ABHD14A-ACY1A0A1B0GW23 586 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 FAM153BP0C7A2 387 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 CSF2RAP15509 400 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 ITGB8P26012 769 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 NDST1P52848 882 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 RAD23BP54727 409 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 GPC5P78333 572 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 FAM153CQ494X1 144 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 TTMPQ5BVD1 217 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 DCLRE1AQ6PJP8 1040 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 TRIM72Q6ZMU5 477 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 LIMS2Q7Z4I7 341 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 UNC93AQ86WB7 457 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 KLHL7Q8IXQ5 586 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 TOP6BLQ8N6T0 577 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 UBL4BQ8N7F7 174 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 ZNF606Q8WXB4 792 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 TMEM176AQ96HP8 235 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 ATP6V1G3Q96LB4 118 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 FAM193BQ96PV7 902 aaPredicted RBP12.36□□□□□ -0.43
VRK3-223ENST00000601341 PCDHB18PQ96TA0 734 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 MRPL45Q9BRJ2 306 aaKnown RBP12.36□□□□□ -0.43
VRK3-223ENST00000601341 NT5C1AQ9BXI3 368 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 TBC1D13Q9NVG8 400 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 FAM153AQ9UHL3 310 aa12.36□□□□□ -0.43
VRK3-223ENST00000601341 ZSCAN5CA6NGD5 496 aaPredicted RBP12.35□□□□□ -0.43
VRK3-223ENST00000601341 CYB561D2O14569 222 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 MED7O43513 233 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 EFCAB14O75071 495 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 B3GAT3O94766 335 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 CALCAP01258 141 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 CD19P15391 556 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 EIF3BP55884 814 aaKnown RBP12.35□□□□□ -0.43
VRK3-223ENST00000601341 DSC1Q08554 894 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 HLTFQ14527 1009 aaKnown RBP eCLIP12.35□□□□□ -0.43
VRK3-223ENST00000601341 PALB2Q86YC2 1186 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 SLC4A11Q8NBS3 891 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 C3orf20Q8ND61 904 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 VWCEQ96DN2 955 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 SENP8Q96LD8 212 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 CASD1Q96PB1 797 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 PAAF1Q9BRP4 392 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 MRPL9Q9BYD2 267 aaKnown RBP12.35□□□□□ -0.43
VRK3-223ENST00000601341 ELOVL4Q9GZR5 314 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 SNX25Q9H3E2 840 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 CACNG4Q9UBN1 327 aa12.35□□□□□ -0.43
VRK3-223ENST00000601341 RRP15Q9Y3B9 282 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms