RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 C1QBPQ07021 282 aaKnown RBP16.36■□□□□ 0.21
UPF1-206ENST00000598471 BST2Q10589 180 aaKnown RBP16.36■□□□□ 0.21
UPF1-206ENST00000598471 IFI16Q16666 785 aaKnown RBP16.36■□□□□ 0.21
UPF1-206ENST00000598471 CTXN3Q4LDR2 81 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 KIAA1841Q6NSI8 718 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 C4orf50Q6ZRC1 276 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 ERICH1Q86X53 443 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 PHF13Q86YI8 300 aaPredicted RBP16.36■□□□□ 0.21
UPF1-206ENST00000598471 TDHQ8IZJ6 230 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 ANKRD52Q8NB46 1076 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 SLC2A14Q8TDB8 520 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 IPO4Q8TEX9 1081 aaKnown RBP16.36■□□□□ 0.21
UPF1-206ENST00000598471 BCL7CQ8WUZ0 217 aaPredicted RBP16.36■□□□□ 0.21
UPF1-206ENST00000598471 CPA5Q8WXQ8 436 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 ZNF653Q96CK0 615 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 VCPIP1Q96JH7 1222 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 HERC2P3Q9BVR0 1158 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 PACSIN1Q9BY11 444 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 CRTAC1Q9NQ79 661 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 ADAM22Q9P0K1 906 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 PTPRSQ13332 1948 aa16.36■□□□□ 0.21
UPF1-206ENST00000598471 CEP290O15078 2479 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 A0A0A6YYK5 440 aaPredicted RBP16.35■□□□□ 0.21
UPF1-206ENST00000598471 BTNL10A8MVZ5 291 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 KIF2AO00139 706 aaPredicted RBP16.35■□□□□ 0.21
UPF1-206ENST00000598471 KIF5CO60282 957 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 ATP2C2O75185 946 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 FAM200BP0CF97 657 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 MRPL58Q14197 206 aaKnown RBP16.35■□□□□ 0.21
UPF1-206ENST00000598471 PTPN14Q15678 1187 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 NFE2Q16621 373 aaPredicted RBP16.35■□□□□ 0.21
UPF1-206ENST00000598471 HABP4Q5JVS0 413 aaKnown RBP16.35■□□□□ 0.21
UPF1-206ENST00000598471 RHOT2Q8IXI1 618 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 OR10T2Q8NGX3 314 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 UBA3Q8TBC4 463 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 RFFLQ8WZ73 363 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 CLP1Q92989 425 aaKnown RBP16.35■□□□□ 0.21
UPF1-206ENST00000598471 SECISBP2LQ93073 1101 aaKnown RBP16.35■□□□□ 0.21
UPF1-206ENST00000598471 CALR3Q96L12 384 aaKnown RBP16.35■□□□□ 0.21
UPF1-206ENST00000598471 C11orf70Q9BRQ4 267 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 LACRTQ9GZZ8 138 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 SYNCQ9H7C4 482 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 GTF3C4Q9UKN8 822 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 STRIP2Q9ULQ0 834 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 GUCA1BQ9UMX6 200 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 NCANO14594 1321 aa16.35■□□□□ 0.21
UPF1-206ENST00000598471 MYBPHLA2RUH7 354 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 RCCD1A6NED2 376 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 TUBB4AP04350 444 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 URODP06132 367 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 MMP8P22894 467 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 ARHGAP25P42331 645 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 GPD2P43304 727 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 GLUD2P49448 558 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 NAP1L1P55209 391 aaKnown RBP16.34■□□□□ 0.21
UPF1-206ENST00000598471 PDCLQ13371 301 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 KIAA0319Q5VV43 1072 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 FAM171BQ6P995 826 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 MON1BQ7L1V2 547 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 DDX53Q86TM3 631 aaKnown RBP16.34■□□□□ 0.21
UPF1-206ENST00000598471 FAM35AQ86V20 835 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 TTC30AQ86WT1 665 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 SPATA2LQ8IUW3 424 aaPredicted RBP16.34■□□□□ 0.21
UPF1-206ENST00000598471 RNF168Q8IYW5 571 aaPredicted RBP16.34■□□□□ 0.21
UPF1-206ENST00000598471 MCOLN2Q8IZK6 566 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 FUKQ8N0W3 1084 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 RNF10Q8N5U6 811 aaKnown RBP16.34■□□□□ 0.21
UPF1-206ENST00000598471 STK32AQ8WU08 396 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 PIK3R5Q8WYR1 880 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 MYLPFQ96A32 169 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 SMARCD1Q96GM5 515 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 PCED1BQ96HM7 432 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 LPIN3Q9BQK8 851 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 B3GNT5Q9BYG0 378 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 ZCWPW1Q9H0M4 648 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 THAP2Q9H0W7 228 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 AVENQ9NQS1 362 aaPredicted RBP16.34■□□□□ 0.21
UPF1-206ENST00000598471 MYO1AQ9UBC5 1043 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 SSX2IPQ9Y2D8 614 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 SCINQ9Y6U3 715 aa16.34■□□□□ 0.21
UPF1-206ENST00000598471 MACROD2A1Z1Q3 448 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 EFEMP2O95967 443 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 CPB1P15086 417 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 NPR3P17342 541 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 ACADSBP45954 432 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 CREMQ03060 361 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 PDE4CQ08493 712 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 SMARCB1Q12824 385 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 PSMD5Q16401 504 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 PKDCCQ504Y2 493 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 RTP2Q5QGT7 225 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 MMS22LQ6ZRQ5 1243 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 RIN2Q8WYP3 895 aaPredicted RBP16.33■□□□□ 0.2
UPF1-206ENST00000598471 B3GALT6Q96L58 329 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 ALS2CR12Q96Q35 445 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 PKMYT1Q99640 499 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 PLVAPQ9BX97 442 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 DUSP16Q9BY84 665 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 CYLDQ9NQC7 956 aa16.33■□□□□ 0.2
UPF1-206ENST00000598471 ST7Q9NRC1 585 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms