RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 LMO2P25791 158 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 GPR15P49685 360 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 ANGPT1Q15389 498 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 ZACNQ401N2 412 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 COBLL1Q53SF7 1204 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 C1orf220Q5T0J3 134 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 STXBP5Q5T5C0 1151 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 ZNF658Q5TYW1 1059 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-205ENST00000595028 FAM171BQ6P995 826 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 C4orf50Q6ZRC1 276 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 INTS8Q75QN2 995 aaKnown RBP16.15■□□□□ 0.18
TRIM28-205ENST00000595028 SPATA2LQ8IUW3 424 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-205ENST00000595028 FAM186BQ8IYM0 893 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 ZSCAN18Q8TBC5 510 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-205ENST00000595028 GIPC2Q8TF65 315 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 ERCC4Q92889 916 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-205ENST00000595028 SMARCE1Q969G3 411 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 PLA2G2FQ9BZM2 168 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 ATXN3LQ9H3M9 355 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 TRPV4Q9HBA0 871 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 IL21Q9HBE4 155 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 ZFP14Q9HCL3 533 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 CRTAC1Q9NQ79 661 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 NXF1Q9UBU9 619 aaKnown RBP16.15■□□□□ 0.18
TRIM28-205ENST00000595028 NME7Q9Y5B8 376 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 PCDHA5Q9Y5H7 936 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 MIA3Q5JRA6 1907 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 CHD6Q8TD26 2715 aa16.15■□□□□ 0.18
TRIM28-205ENST00000595028 COL4A3Q01955 1670 aa16.14■□□□□ 0.18
TRIM28-205ENST00000595028 KIF26AQ9ULI4 1882 aaPredicted RBP16.14■□□□□ 0.17
TRIM28-205ENST00000595028 TICRRQ7Z2Z1 1910 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 IKBKBO14920 756 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 PI15O43692 258 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 GADD45BO75293 160 aaPredicted RBP16.14■□□□□ 0.17
TRIM28-205ENST00000595028 CLSTN1O94985 981 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 FAM163BP0C2L3 166 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 AOC1P19801 751 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 CYP2F1P24903 491 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 CDC25CP30307 473 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 PSMC2P35998 433 aaKnown RBP16.14■□□□□ 0.17
TRIM28-205ENST00000595028 MAGEA11P43364 429 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 VAMP7P51809 220 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 RPL10AP62906 217 aaKnown RBP16.14■□□□□ 0.17
TRIM28-205ENST00000595028 PFKPQ01813 784 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 ENPEPQ07075 957 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 ADAM9Q13443 819 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 PUM1Q14671 1186 aaKnown RBP eCLIP16.14■□□□□ 0.17
TRIM28-205ENST00000595028 MAPRE1Q15691 268 aaKnown RBP16.14■□□□□ 0.17
TRIM28-205ENST00000595028 TAF12Q16514 161 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 ZNF667Q5HYK9 610 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 ELOA2Q8IYF1 753 aaPredicted RBP16.14■□□□□ 0.17
TRIM28-205ENST00000595028 STKLD1Q8NE28 680 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 GCNAQ96QF7 691 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 MKNK1Q9BUB5 465 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 SNX25Q9H3E2 840 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 SMYD3Q9H7B4 428 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 TBC1D17Q9HA65 648 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 CHMP5Q9NZZ3 219 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 SPTBN2O15020 2390 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 NCANO14594 1321 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 F5P12259 2224 aa16.14■□□□□ 0.17
TRIM28-205ENST00000595028 LMNAP02545 664 aaKnown RBP16.13■□□□□ 0.17
TRIM28-205ENST00000595028 PDGFRBP09619 1106 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 TRIM49P0CI25 452 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 TRIM49CP0CI26 452 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 CSH1P0DML2 217 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 CSH2P0DML3 217 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 KRT13P13646 458 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 HMGA1P17096 107 aaKnown RBP16.13■□□□□ 0.17
TRIM28-205ENST00000595028 GNL1P36915 607 aaPredicted RBP16.13■□□□□ 0.17
TRIM28-205ENST00000595028 ANP32AP39687 249 aaKnown RBP16.13■□□□□ 0.17
TRIM28-205ENST00000595028 PIK3CAP42336 1068 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 PRCPP42785 496 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 CYP4F8P98187 520 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 ARHGAP15Q53QZ3 475 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 SDHAF4Q5VUM1 108 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 SCARA5Q6ZMJ2 495 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 SV2AQ7L0J3 742 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 CCDC105Q8IYK2 499 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 OR6B3Q8NGW1 331 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 MYCBPAPQ8TBZ2 947 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 GTPBP4Q9BZE4 634 aaKnown RBP16.13■□□□□ 0.17
TRIM28-205ENST00000595028 OTOGLQ3ZCN5 2332 aa16.13■□□□□ 0.17
TRIM28-205ENST00000595028 ZNF638Q14966 1978 aaKnown RBP16.13■□□□□ 0.17
TRIM28-205ENST00000595028 NOL4O94818 638 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 ASS1P00966 412 aaKnown RBP16.12■□□□□ 0.17
TRIM28-205ENST00000595028 RFX1P22670 979 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 VIPR2P41587 438 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 RAP1GAPP47736 663 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 NLRP12P59046 1061 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 GRM2Q14416 872 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 MLF2Q15773 248 aaPredicted RBP16.12■□□□□ 0.17
TRIM28-205ENST00000595028 DDR2Q16832 855 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 MDH1BQ5I0G3 518 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 GPR158Q5T848 1215 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 PHLDB3Q6NSJ2 640 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 VSTM1Q6UX27 236 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 VITQ6UXI7 678 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 SCN4BQ8IWT1 228 aa16.12■□□□□ 0.17
TRIM28-205ENST00000595028 DEPDC1BQ8WUY9 529 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms