RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 AGAP1Q9UPQ3 857 aa3.73□□□□□ -1.81
SPG11-222ENST00000560435 PRSS29PA6NIE9 313 aa3.72□□□□□ -1.81
SPG11-222ENST00000560435 ERVV-2B6SEH9 535 aa3.72□□□□□ -1.81
SPG11-222ENST00000560435 UBE2Q2LH0YL09 131 aa3.72□□□□□ -1.81
SPG11-222ENST00000560435 ADAM10O14672 748 aa3.72□□□□□ -1.81
SPG11-222ENST00000560435 DSCR3O14972 297 aa3.72□□□□□ -1.81
SPG11-222ENST00000560435 HTRA2O43464 458 aaPredicted RBP3.72□□□□□ -1.81
SPG11-222ENST00000560435 SMAD6O43541 496 aaKnown RBP3.72□□□□□ -1.81
SPG11-222ENST00000560435 ABLIM3O94929 683 aa3.72□□□□□ -1.81
SPG11-222ENST00000560435 KIF20AO95235 890 aa3.72□□□□□ -1.81
SPG11-222ENST00000560435 EYA4O95677 639 aa3.72□□□□□ -1.81
SPG11-222ENST00000560435 MALP21145 153 aa3.72□□□□□ -1.81
SPG11-222ENST00000560435 PDE1AP54750 535 aa3.72□□□□□ -1.81
SPG11-222ENST00000560435 SRSF1Q07955 248 aaKnown RBP eCLIP3.72□□□□□ -1.81
SPG11-222ENST00000560435 C3orf36Q3SXR2 165 aa3.72□□□□□ -1.81
SPG11-222ENST00000560435 KRTAP5-1Q6L8H4 278 aa3.72□□□□□ -1.81
SPG11-222ENST00000560435 SLC4A10Q6U841 1118 aa3.72□□□□□ -1.81
SPG11-222ENST00000560435 TMEM108Q6UXF1 575 aa3.72□□□□□ -1.81
SPG11-222ENST00000560435 ZBTB8BQ8NAP8 495 aaPredicted RBP3.72□□□□□ -1.81
SPG11-222ENST00000560435 SNX18Q96RF0 628 aa3.72□□□□□ -1.81
SPG11-222ENST00000560435 CTAGE1Q96RT6 745 aa3.72□□□□□ -1.81
SPG11-222ENST00000560435 THAP7Q9BT49 309 aaPredicted RBP3.72□□□□□ -1.81
SPG11-222ENST00000560435 PRSS44E7EML9 344 aa3.71□□□□□ -1.82
SPG11-222ENST00000560435 GPR39O43194 453 aa3.71□□□□□ -1.82
SPG11-222ENST00000560435 FESP07332 822 aa3.71□□□□□ -1.82
SPG11-222ENST00000560435 RARBP10826 455 aa3.71□□□□□ -1.82
SPG11-222ENST00000560435 EDNRBP24530 442 aa3.71□□□□□ -1.82
SPG11-222ENST00000560435 KCNJ5P48544 419 aa3.71□□□□□ -1.82
SPG11-222ENST00000560435 GYS2P54840 703 aa3.71□□□□□ -1.82
SPG11-222ENST00000560435 KLF1Q13351 362 aaPredicted RBP3.71□□□□□ -1.82
SPG11-222ENST00000560435 SNAPC2Q13487 334 aa3.71□□□□□ -1.82
SPG11-222ENST00000560435 ZNF268Q14587 947 aaPredicted RBP3.71□□□□□ -1.82
SPG11-222ENST00000560435 KIF22Q14807 665 aa3.71□□□□□ -1.82
SPG11-222ENST00000560435 LHFPL2Q6ZUX7 228 aa3.71□□□□□ -1.82
SPG11-222ENST00000560435 Q6ZWC4 215 aa3.71□□□□□ -1.82
SPG11-222ENST00000560435 USP43Q70EL4 1123 aa3.71□□□□□ -1.82
SPG11-222ENST00000560435 NPM2Q86SE8 214 aaKnown RBP3.71□□□□□ -1.82
SPG11-222ENST00000560435 SPATS2Q86XZ4 545 aaKnown RBP3.71□□□□□ -1.82
SPG11-222ENST00000560435 TERB1Q8NA31 727 aa3.71□□□□□ -1.82
SPG11-222ENST00000560435 NSUN6Q8TEA1 469 aaKnown RBP3.71□□□□□ -1.82
SPG11-222ENST00000560435 HIPK2Q9H2X6 1198 aa3.71□□□□□ -1.82
SPG11-222ENST00000560435 FOXP1Q9H334 677 aaPredicted RBP3.71□□□□□ -1.82
SPG11-222ENST00000560435 PROCRQ9UNN8 238 aa3.71□□□□□ -1.82
SPG11-222ENST00000560435 LIMCH1Q9UPQ0 1083 aa3.71□□□□□ -1.82
SPG11-222ENST00000560435 TOMM40O96008 361 aa3.7□□□□□ -1.82
SPG11-222ENST00000560435 RPLP2P05387 115 aaKnown RBP3.7□□□□□ -1.82
SPG11-222ENST00000560435 CPEP16870 476 aa3.7□□□□□ -1.82
SPG11-222ENST00000560435 PPIFP30405 207 aaKnown RBP3.7□□□□□ -1.82
SPG11-222ENST00000560435 TPTEP56180 551 aa3.7□□□□□ -1.82
SPG11-222ENST00000560435 GPSM2P81274 684 aa3.7□□□□□ -1.82
SPG11-222ENST00000560435 GHRHRQ02643 423 aa3.7□□□□□ -1.82
SPG11-222ENST00000560435 BOP1Q14137 746 aaKnown RBP3.7□□□□□ -1.82
SPG11-222ENST00000560435 NPY5RQ15761 445 aa3.7□□□□□ -1.82
SPG11-222ENST00000560435 TBC1D25Q3MII6 688 aa3.7□□□□□ -1.82
SPG11-222ENST00000560435 KHDC1Q4VXA5 237 aaKnown RBP3.7□□□□□ -1.82
SPG11-222ENST00000560435 MTHFD1LQ6UB35 978 aa3.7□□□□□ -1.82
SPG11-222ENST00000560435 PIP4P1Q86T03 277 aa3.7□□□□□ -1.82
SPG11-222ENST00000560435 ABHD11Q8NFV4 315 aa3.7□□□□□ -1.82
SPG11-222ENST00000560435 CHAC2Q8WUX2 184 aa3.7□□□□□ -1.82
SPG11-222ENST00000560435 KAT5Q92993 513 aa3.7□□□□□ -1.82
SPG11-222ENST00000560435 DRC1Q96MC2 740 aa3.7□□□□□ -1.82
SPG11-222ENST00000560435 VRK1Q99986 396 aaPredicted RBP3.7□□□□□ -1.82
SPG11-222ENST00000560435 GLOD4Q9HC38 313 aa3.7□□□□□ -1.82
SPG11-222ENST00000560435 CFAP20Q9Y6A4 193 aaKnown RBP3.7□□□□□ -1.82
SPG11-222ENST00000560435 EME2A4GXA9 379 aaPredicted RBP3.69□□□□□ -1.82
SPG11-222ENST00000560435 CCDC154A6NI56 674 aa3.69□□□□□ -1.82
SPG11-222ENST00000560435 GTPBP1O00178 669 aaKnown RBP3.69□□□□□ -1.82
SPG11-222ENST00000560435 EXOC3O60645 756 aa3.69□□□□□ -1.82
SPG11-222ENST00000560435 KRT10P13645 584 aa3.69□□□□□ -1.82
SPG11-222ENST00000560435 C5AR1P21730 350 aa3.69□□□□□ -1.82
SPG11-222ENST00000560435 HOXD9P28356 352 aaPredicted RBP3.69□□□□□ -1.82
SPG11-222ENST00000560435 PIK3CGP48736 1102 aa3.69□□□□□ -1.82
SPG11-222ENST00000560435 FXR1P51114 621 aaKnown RBP eCLIP3.69□□□□□ -1.82
SPG11-222ENST00000560435 SP2Q02086 613 aa3.69□□□□□ -1.82
SPG11-222ENST00000560435 CLUL1Q15846 466 aa3.69□□□□□ -1.82
SPG11-222ENST00000560435 UBAP2Q5T6F2 1119 aaKnown RBP3.69□□□□□ -1.82
SPG11-222ENST00000560435 SERPINA13PQ6UXR4 307 aa3.69□□□□□ -1.82
SPG11-222ENST00000560435 C18orf65Q6ZTR6 163 aa3.69□□□□□ -1.82
SPG11-222ENST00000560435 TTC7BQ86TV6 843 aa3.69□□□□□ -1.82
SPG11-222ENST00000560435 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3.69□□□□□ -1.82
SPG11-222ENST00000560435 COG1Q8WTW3 980 aa3.69□□□□□ -1.82
SPG11-222ENST00000560435 ATG4AQ8WYN0 398 aa3.69□□□□□ -1.82
SPG11-222ENST00000560435 JADE3Q92613 823 aa3.69□□□□□ -1.82
SPG11-222ENST00000560435 DDX17Q92841 729 aaKnown RBP3.69□□□□□ -1.82
SPG11-222ENST00000560435 THOC3Q96J01 351 aaKnown RBP3.69□□□□□ -1.82
SPG11-222ENST00000560435 POT1Q9NUX5 634 aa3.69□□□□□ -1.82
SPG11-222ENST00000560435 SERTAD3Q9UJW9 196 aa3.69□□□□□ -1.82
SPG11-222ENST00000560435 SSX2IPQ9Y2D8 614 aa3.69□□□□□ -1.82
SPG11-222ENST00000560435 TTC3P53804 2025 aa3.68□□□□□ -1.82
SPG11-222ENST00000560435 H3BNX3 289 aa3.68□□□□□ -1.82
SPG11-222ENST00000560435 M0QYG6 137 aa3.68□□□□□ -1.82
SPG11-222ENST00000560435 PDE8BO95263 885 aa3.68□□□□□ -1.82
SPG11-222ENST00000560435 CRYABP02511 175 aaKnown RBP3.68□□□□□ -1.82
SPG11-222ENST00000560435 A1BGP04217 495 aa3.68□□□□□ -1.82
SPG11-222ENST00000560435 FTH1P19P0C7X4 201 aa3.68□□□□□ -1.82
SPG11-222ENST00000560435 SMARCA1P28370 1054 aa3.68□□□□□ -1.82
SPG11-222ENST00000560435 RENBPP51606 427 aa3.68□□□□□ -1.82
SPG11-222ENST00000560435 LOXL3P58215 753 aa3.68□□□□□ -1.82
SPG11-222ENST00000560435 CT47A1Q5JQC4 288 aaPredicted RBP3.68□□□□□ -1.82
SPG11-222ENST00000560435 FAM160B1Q5W0V3 765 aa3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms