RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 GTF3C4Q9UKN8 822 aa9.85□□□□□ -0.83
HDDC3-204ENST00000559834 ITGA11Q9UKX5 1188 aa9.85□□□□□ -0.83
HDDC3-204ENST00000559834 CCL26Q9Y258 94 aa9.85□□□□□ -0.83
HDDC3-204ENST00000559834 SRPRBQ9Y5M8 271 aaKnown RBP9.85□□□□□ -0.83
HDDC3-204ENST00000559834 SNX9Q9Y5X1 595 aa9.85□□□□□ -0.83
HDDC3-204ENST00000559834 RALGAPA1Q6GYQ0 2036 aa9.85□□□□□ -0.83
HDDC3-204ENST00000559834 SDK1Q7Z5N4 2213 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 SCN1AP35498 2009 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 OTOL1A6NHN0 477 aaPredicted RBP9.84□□□□□ -0.83
HDDC3-204ENST00000559834 MYMKA6NI61 221 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 RNF40O75150 1001 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 NOL4O94818 638 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 EPN2O95208 641 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 EGFP01133 1207 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 TMEM191BP0C7N4 346 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 IDEP14735 1019 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 ARSAP15289 507 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 HDCP19113 662 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 KCNA4P22459 653 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 GJA4P35212 333 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 IFNAR2P48551 515 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 GPR15P49685 360 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 KCNA1Q09470 495 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 PSMD2Q13200 908 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 MTF1Q14872 753 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 SF3A2Q15428 464 aaKnown RBP9.84□□□□□ -0.83
HDDC3-204ENST00000559834 SURF1Q15526 300 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 MAPRE1Q15691 268 aaKnown RBP9.84□□□□□ -0.83
HDDC3-204ENST00000559834 ELF2Q15723 593 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 CFAP221Q4G0U5 840 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 SDHAF4Q5VUM1 108 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 PKN3Q6P5Z2 889 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 C4orf50Q6ZRC1 276 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 CCDC73Q6ZRK6 1079 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 STXBP4Q6ZWJ1 553 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 USP49Q70CQ1 688 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 SYT13Q7L8C5 426 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 KBTBD6Q86V97 674 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 SCN4BQ8IWT1 228 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 C1orf127Q8N9H9 656 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 CD101Q93033 1021 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 ACDQ96AP0 544 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 SAAL1Q96ER3 474 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 FUBP3Q96I24 572 aaKnown RBP eCLIP9.84□□□□□ -0.83
HDDC3-204ENST00000559834 ANKRD36BP1Q96IX9 119 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 CEP295NLQ96MC4 621 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 CYP2S1Q96SQ9 504 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 TRPC7Q9HCX4 862 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 OLFML3Q9NRN5 406 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 VPS45Q9NRW7 570 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 EHD2Q9NZN4 543 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 TBC1D7Q9P0N9 293 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 L1RE1Q9UN81 338 aa9.84□□□□□ -0.83
HDDC3-204ENST00000559834 CACNA1BQ00975 2339 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 VPS37CA5D8V6 355 aaPredicted RBP9.83□□□□□ -0.84
HDDC3-204ENST00000559834 GOLGA8IPA6NC78 632 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 GOLGA8JA6NMD2 632 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 GABRDO14764 452 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 CD2BP2O95400 341 aaKnown RBP9.83□□□□□ -0.84
HDDC3-204ENST00000559834 APBB3O95704 486 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 TNNC2P02585 160 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 CKMP06732 381 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 PFKLP17858 780 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 ACAT1P24752 427 aaKnown RBP9.83□□□□□ -0.84
HDDC3-204ENST00000559834 MAGEA11P43364 429 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 KCNB1Q14721 858 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 ST3GAL2Q16842 350 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 PLA2G2CQ5R387 149 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 STPG1Q5TH74 334 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 FAM171BQ6P995 826 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 VSTM1Q6UX27 236 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 C11orf74Q86VG3 221 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 ADGRF2Q8IZF7 708 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 ARL14EPQ8N8R7 260 aaPredicted RBP9.83□□□□□ -0.84
HDDC3-204ENST00000559834 TTC16Q8NEE8 873 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 RPLP0P6Q8NHW5 317 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 NOC3LQ8WTT2 800 aaKnown RBP9.83□□□□□ -0.84
HDDC3-204ENST00000559834 DNAJC19Q96DA6 116 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 CHFRQ96EP1 664 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 LRRC27Q9C0I9 530 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 IKZF4Q9H2S9 585 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 FBRSL1Q9HCM7 1045 aaKnown RBP9.83□□□□□ -0.84
HDDC3-204ENST00000559834 PDE11AQ9HCR9 933 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 PANK4Q9NVE7 773 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 MAGEC2Q9UBF1 373 aaPredicted RBP9.83□□□□□ -0.84
HDDC3-204ENST00000559834 EBF1Q9UH73 591 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 CDH9Q9ULB4 789 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 CLIC4Q9Y696 253 aa9.83□□□□□ -0.84
HDDC3-204ENST00000559834 NUP210Q8TEM1 1887 aaPredicted RBP9.83□□□□□ -0.84
HDDC3-204ENST00000559834 ZNF233A6NK53 670 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 TM4SF5O14894 197 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 KRT37O76014 449 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 NFATC1O95644 943 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 TCF3P15923 654 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 ANXA13P27216 316 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 HOXC13P31276 330 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 GRIK1P39086 918 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 MPLP40238 635 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 STAT6P42226 847 aa9.82□□□□□ -0.84
HDDC3-204ENST00000559834 PPP3CCP48454 512 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms