RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 WDR93Q6P2C0 686 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 FBXO38Q6PIJ6 1188 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 ANKRD33Q7Z3H0 272 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 CTU1Q7Z7A3 348 aaKnown RBP13.18□□□□□ -0.3
SHMT2-233ENST00000557529 RHOT1Q8IXI2 618 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 NIPA2Q8N8Q9 360 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 ANKRD52Q8NB46 1076 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 LINC01599Q8WXQ3 324 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 MCRS1Q96EZ8 462 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 TOX2Q96NM4 488 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 CRISPLD2Q9H0B8 497 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 EPC1Q9H2F5 836 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 DPEP3Q9H4B8 488 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 ELAC1Q9H777 363 aaKnown RBP13.18□□□□□ -0.3
SHMT2-233ENST00000557529 CYLDQ9NQC7 956 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 TMEM161AQ9NX61 479 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 DSEQ9UL01 958 aa13.18□□□□□ -0.3
SHMT2-233ENST00000557529 CCDC151A5D8V7 595 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 DCDC2CA8MYV0 355 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 GOLGA8SH3BPF8 625 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 PQBP1O60828 265 aaKnown RBP13.17□□□□□ -0.3
SHMT2-233ENST00000557529 NBNO60934 754 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 ERLIN1O75477 346 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 ODC1P11926 461 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 MARCKSL1P49006 195 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 SLC8A3P57103 927 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 RPL7AP62424 266 aaKnown RBP13.17□□□□□ -0.3
SHMT2-233ENST00000557529 PLEKHG4Q58EX7 1191 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 LRRC38Q5VT99 294 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 DCLRE1AQ6PJP8 1040 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 SLC39A5Q6ZMH5 540 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 OSTM1Q86WC4 334 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 TTC30AQ86WT1 665 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 METTL23Q86XA0 190 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 ZDHHC17Q8IUH5 632 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 B3GALNT2Q8NCR0 500 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 SLC35F5Q8WV83 523 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 HNRNPABQ99729 332 aaKnown RBP13.17□□□□□ -0.3
SHMT2-233ENST00000557529 SLC4A5Q9BY07 1137 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 ST7Q9NRC1 585 aa13.17□□□□□ -0.3
SHMT2-233ENST00000557529 RNF216Q9NWF9 866 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-233ENST00000557529 B3GAT3O94766 335 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 GJB6O95452 261 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 PYGMP11217 842 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 PTPN1P18031 435 aaKnown RBP13.16□□□□□ -0.3
SHMT2-233ENST00000557529 PCSK1P29120 753 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 ADORA2BP29275 332 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 ACADSBP45954 432 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 PDE4CQ08493 712 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 ZNF211Q13398 564 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-233ENST00000557529 ACAP1Q15027 740 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 NOMO2Q5JPE7 1267 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 C1orf53Q5VUE5 145 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 FBXO46Q6PJ61 603 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-233ENST00000557529 TMCO3Q6UWJ1 677 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 TMEM110Q86TL2 294 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 CPNE8Q86YQ8 564 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 KATNAL2Q8IYT4 538 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 C3orf58Q8NDZ4 430 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 RSPH1Q8WYR4 309 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 PNKPQ96T60 521 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 KRT12Q99456 494 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 LRRC1Q9BTT6 524 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 SLITRK6Q9H5Y7 841 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 DDX43Q9NXZ2 648 aaKnown RBP13.16□□□□□ -0.3
SHMT2-233ENST00000557529 TJP2Q9UDY2 1190 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 CDH9Q9ULB4 789 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 MTUS1Q9ULD2 1270 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 USTQ9Y2C2 406 aa13.16□□□□□ -0.3
SHMT2-233ENST00000557529 E5RJQ4 531 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 M0QZQ0 153 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 ENPP3O14638 875 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 HOXA2O43364 376 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 CYP11A1P05108 521 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 CCDC130P13994 396 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 PSMA2P25787 234 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 RFC1P35251 1148 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-233ENST00000557529 SCNN1AP37088 669 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 CETN2P41208 172 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 SSR1P43307 286 aaKnown RBP13.15□□□□□ -0.3
SHMT2-233ENST00000557529 CLCN6P51797 869 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 RBM10P98175 930 aaKnown RBP13.15□□□□□ -0.3
SHMT2-233ENST00000557529 GPNMBQ14956 572 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 PKN2Q16513 984 aaKnown RBP13.15□□□□□ -0.3
SHMT2-233ENST00000557529 TIGD5Q53EQ6 642 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 CLLU1OSQ5K130 101 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 FAM102AQ5T9C2 384 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-233ENST00000557529 OR6B2Q6IFH4 312 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 PMF1Q6P1K2 205 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 CC2D1AQ6P1N0 951 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-233ENST00000557529 DBF4BQ8NFT6 615 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 SLC2A14Q8TDB8 520 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 HNRNPLLQ8WVV9 542 aaKnown RBP13.15□□□□□ -0.3
SHMT2-233ENST00000557529 MAIP1Q8WWC4 291 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 ZNF333Q96JL9 665 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 HSFY1Q96LI6 401 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 SYT15Q9BQS2 421 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 AP1M1Q9BXS5 423 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 HIPK3Q9H422 1215 aa13.15□□□□□ -0.3
SHMT2-233ENST00000557529 METTL5Q9NRN9 209 aaKnown RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms