RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 GBP2P32456 591 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-228ENST00000557302 YWHAEP62258 255 aaKnown RBP14.47□□□□□ -0.09
SHMT2-228ENST00000557302 MYL5Q02045 173 aa14.47□□□□□ -0.09
SHMT2-228ENST00000557302 ORC1Q13415 861 aa14.47□□□□□ -0.09
SHMT2-228ENST00000557302 CUL2Q13617 745 aa14.47□□□□□ -0.09
SHMT2-228ENST00000557302 KCNJ12Q14500 433 aa14.47□□□□□ -0.09
SHMT2-228ENST00000557302 TAF12Q16514 161 aa14.47□□□□□ -0.09
SHMT2-228ENST00000557302 MAN2A1Q16706 1144 aa14.47□□□□□ -0.09
SHMT2-228ENST00000557302 CYP4A22Q5TCH4 519 aa14.47□□□□□ -0.09
SHMT2-228ENST00000557302 PDZD4Q76G19 769 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-228ENST00000557302 ACOT1Q86TX2 421 aa14.47□□□□□ -0.09
SHMT2-228ENST00000557302 EHBP1Q8NDI1 1231 aa14.47□□□□□ -0.09
SHMT2-228ENST00000557302 PSMG2Q969U7 264 aa14.47□□□□□ -0.09
SHMT2-228ENST00000557302 ARID3AQ99856 593 aa14.47□□□□□ -0.09
SHMT2-228ENST00000557302 LPIN3Q9BQK8 851 aa14.47□□□□□ -0.09
SHMT2-228ENST00000557302 NT5C1AQ9BXI3 368 aa14.47□□□□□ -0.09
SHMT2-228ENST00000557302 INTS2Q9H0H0 1204 aaKnown RBP14.47□□□□□ -0.09
SHMT2-228ENST00000557302 FAM124BQ9H5Z6 455 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-228ENST00000557302 AVENQ9NQS1 362 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-228ENST00000557302 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.47□□□□□ -0.09
SHMT2-228ENST00000557302 MRPS23Q9Y3D9 190 aaKnown RBP14.47□□□□□ -0.09
SHMT2-228ENST00000557302 ATP8B3O60423 1300 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 SYCE3A1L190 88 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 TNFRSF10AO00220 468 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 ZNF197O14709 1029 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 MYL4P12829 197 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 BDNFP23560 247 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 GPR15P49685 360 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 ANO6Q4KMQ2 910 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 TCP11X2Q5H9J9 407 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 VSTM1Q6UX27 236 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 DNAJB7Q7Z6W7 309 aaPredicted RBP14.46□□□□□ -0.09
SHMT2-228ENST00000557302 SCN4BQ8IWT1 228 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 HS6ST3Q8IZP7 471 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 CRYBG2Q8N1P7 616 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 PLCD3Q8N3E9 789 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 PPM1KQ8N3J5 372 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 LMO3Q8TAP4 145 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 GIPC2Q8TF65 315 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 TWNKQ96RR1 684 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 MYADMQ96S97 322 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 TUBGCP2Q9BSJ2 902 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 B3GNT5Q9BYG0 378 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 ELOVL4Q9GZR5 314 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 CD320Q9NPF0 282 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 CISHQ9NSE2 258 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 GCNT4Q9P109 453 aa14.46□□□□□ -0.09
SHMT2-228ENST00000557302 GTPBP10A4D1E9 387 aaKnown RBP14.45□□□□□ -0.1
SHMT2-228ENST00000557302 TRIM66O15016 1216 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 ANXA13P27216 316 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 GRIK1P39086 918 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 EPHA5P54756 1037 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 DDR2Q16832 855 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 SLC5A9Q2M3M2 681 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 VWA3BQ502W6 1294 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 PRSS36Q5K4E3 855 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 SDHAF4Q5VUM1 108 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 CDKAL1Q5VV42 579 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 GBP6Q6ZN66 633 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 DENND4AQ7Z401 1863 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 ZDHHC14Q8IZN3 488 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 ITFG1Q8TB96 612 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 GPR152Q8TDT2 470 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 WHAMMQ8TF30 809 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 CRACR2AQ9BSW2 395 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 MED10Q9BTT4 135 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 ZNF518BQ9C0D4 1074 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 NDST4Q9H3R1 872 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 FANCLQ9NW38 375 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 CDH7Q9ULB5 785 aa14.45□□□□□ -0.1
SHMT2-228ENST00000557302 ZFP37Q9Y6Q3 630 aaPredicted RBP14.45□□□□□ -0.1
SHMT2-228ENST00000557302 CLDN5O00501 218 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 PES1O00541 588 aaKnown RBP14.44□□□□□ -0.1
SHMT2-228ENST00000557302 MICAL2O94851 1124 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 FGF19O95750 216 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 TPM2P07951 284 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 CSH1P0DML2 217 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 CSH2P0DML3 217 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 CCDC130P13994 396 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 CEBPBP17676 345 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 GCNT1Q02742 428 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 EXOC3L4Q17RC7 722 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 ZNF394Q53GI3 561 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 FAM35AQ86V20 835 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 TMC8Q8IU68 726 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 RNF135Q8IUD6 432 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 NPAS3Q8IXF0 933 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 AOPEPQ8N6M6 819 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 C12orf29Q8N999 325 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 ANKRD20A12PQ8NF67 263 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 SLC2A14Q8TDB8 520 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 ING5Q8WYH8 240 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 FGF13Q92913 245 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 TCEAL4Q96EI5 215 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 SMARCD1Q96GM5 515 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 BPIFA3Q9BQP9 254 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 LRRC3Q9BY71 257 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 ZNF334Q9HCZ1 680 aaPredicted RBP14.44□□□□□ -0.1
SHMT2-228ENST00000557302 FAM49BQ9NUQ9 324 aa14.44□□□□□ -0.1
SHMT2-228ENST00000557302 TAB2Q9NYJ8 693 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms