RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 SPATA32Q96LK8 384 aa12.74□□□□□ -0.37
CKAP4-202ENST00000552828 MYRFLQ96LU7 910 aa12.74□□□□□ -0.37
CKAP4-202ENST00000552828 ZNF560Q96MR9 790 aa12.74□□□□□ -0.37
CKAP4-202ENST00000552828 PKMYT1Q99640 499 aa12.74□□□□□ -0.37
CKAP4-202ENST00000552828 PANK2Q9BZ23 570 aa12.74□□□□□ -0.37
CKAP4-202ENST00000552828 SCAND2PQ9GZW5 306 aaPredicted RBP12.74□□□□□ -0.37
CKAP4-202ENST00000552828 IKZF4Q9H2S9 585 aa12.74□□□□□ -0.37
CKAP4-202ENST00000552828 EBF3Q9H4W6 596 aa12.74□□□□□ -0.37
CKAP4-202ENST00000552828 FBRSL1Q9HCM7 1045 aaKnown RBP12.74□□□□□ -0.37
CKAP4-202ENST00000552828 SEL1LQ9UBV2 794 aa12.74□□□□□ -0.37
CKAP4-202ENST00000552828 STK17AQ9UEE5 414 aa12.74□□□□□ -0.37
CKAP4-202ENST00000552828 CIZ1Q9ULV3 898 aaPredicted RBP12.74□□□□□ -0.37
CKAP4-202ENST00000552828 AXIN1O15169 862 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 NOL4O94818 638 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 DRD1P21728 446 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 STAT6P42226 847 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 GALK1P51570 392 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 BFSP1Q12934 665 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 TRIM68Q6AZZ1 485 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 SHC4Q6S5L8 630 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 KBTBD6Q86V97 674 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 SFR1Q86XK3 245 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 TMEM86AQ8N2M4 240 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 LRRC52Q8N7C0 313 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 SPATA18Q8TC71 538 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 MRPS31Q92665 395 aaKnown RBP12.73□□□□□ -0.37
CKAP4-202ENST00000552828 PI4K2AQ9BTU6 479 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 ARRDC1-AS1Q9H2J1 176 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 GDAP2Q9NXN4 497 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 FAM13BQ9NYF5 915 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 UXTQ9UBK9 157 aaPredicted RBP12.73□□□□□ -0.37
CKAP4-202ENST00000552828 L1RE1Q9UN81 338 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 SLC8A2Q9UPR5 921 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 PCDHGA5Q9Y5G8 931 aa12.73□□□□□ -0.37
CKAP4-202ENST00000552828 MAP1BP46821 2468 aaKnown RBP12.73□□□□□ -0.37
CKAP4-202ENST00000552828 CNOT1A5YKK6 2376 aaKnown RBP12.72□□□□□ -0.37
CKAP4-202ENST00000552828 KIF26AQ9ULI4 1882 aaPredicted RBP12.72□□□□□ -0.37
CKAP4-202ENST00000552828 GABRDO14764 452 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 RNF40O75150 1001 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 PRPF40AO75400 957 aaKnown RBP12.72□□□□□ -0.37
CKAP4-202ENST00000552828 TADA3O75528 432 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 EGFP01133 1207 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 ARSAP15289 507 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 GAP43P17677 238 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 GJA4P35212 333 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 PXNP49023 591 aaPredicted RBP12.72□□□□□ -0.37
CKAP4-202ENST00000552828 GPR15P49685 360 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 WNT7BP56706 349 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 RPL10AP62906 217 aaKnown RBP12.72□□□□□ -0.37
CKAP4-202ENST00000552828 KCNA1Q09470 495 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 CFAP221Q4G0U5 840 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 FBXO43Q4G163 708 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 INTS6LQ5JSJ4 861 aaKnown RBP12.72□□□□□ -0.37
CKAP4-202ENST00000552828 L1TD1Q5T7N2 865 aaKnown RBP12.72□□□□□ -0.37
CKAP4-202ENST00000552828 CC2D1AQ6P1N0 951 aaPredicted RBP12.72□□□□□ -0.37
CKAP4-202ENST00000552828 SV2BQ7L1I2 683 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 BRSK2Q8IWQ3 736 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 PDILTQ8N807 584 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 C1orf127Q8N9H9 656 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 CACTINQ8WUQ7 758 aaKnown RBP12.72□□□□□ -0.37
CKAP4-202ENST00000552828 DNAJC19Q96DA6 116 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 CHAMP1Q96JM3 812 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 P2RY13Q9BPV8 354 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 FAM213AQ9BRX8 229 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 AGAP1Q9UPQ3 857 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 EXOC7Q9UPT5 735 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 SCN1AP35498 2009 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 LAMA1P25391 3075 aa12.72□□□□□ -0.37
CKAP4-202ENST00000552828 MYMKA6NI61 221 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 HUS1O60921 280 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 LDHAP00338 332 aaKnown RBP12.71□□□□□ -0.37
CKAP4-202ENST00000552828 ITGB3P05106 788 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 GARTP22102 1010 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 CYP2F1P24903 491 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 POLR2BP30876 1174 aaKnown RBP12.71□□□□□ -0.37
CKAP4-202ENST00000552828 TFAMQ00059 246 aaKnown RBP12.71□□□□□ -0.37
CKAP4-202ENST00000552828 FAM160A1Q05DH4 1040 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 SF3A2Q15428 464 aaKnown RBP12.71□□□□□ -0.37
CKAP4-202ENST00000552828 ZNF77Q15935 545 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 DDR2Q16832 855 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 AASDHQ4L235 1098 aaPredicted RBP12.71□□□□□ -0.37
CKAP4-202ENST00000552828 RESP18Q5W5W9 173 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 IL31Q6EBC2 164 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 SYT13Q7L8C5 426 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 DYMQ7RTS9 669 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 LIMS2Q7Z4I7 341 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 TOP6BLQ8N6T0 577 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 IQUBQ8NA54 791 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 ZSWIM2Q8NEG5 633 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 OSCP1Q8WVF1 389 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 EXOC4Q96A65 974 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 FUBP3Q96I24 572 aaKnown RBP eCLIP12.71□□□□□ -0.37
CKAP4-202ENST00000552828 IPO9Q96P70 1041 aaKnown RBP12.71□□□□□ -0.37
CKAP4-202ENST00000552828 ACCSQ96QU6 501 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 TMEM206Q9H813 350 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 ECT2Q9H8V3 914 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 MRPL44Q9H9J2 332 aaKnown RBP12.71□□□□□ -0.37
CKAP4-202ENST00000552828 OLFML3Q9NRN5 406 aa12.71□□□□□ -0.37
CKAP4-202ENST00000552828 DDX43Q9NXZ2 648 aaKnown RBP12.71□□□□□ -0.37
CKAP4-202ENST00000552828 EBF1Q9UH73 591 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms