RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	NCALD	P61601	193 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	PSMC1	P62191	440 aa	Known RBP	13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	FAM187B	Q17R55	369 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	ZBTB41	Q5SVQ8	909 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	ADGRD1	Q6QNK2	874 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	ZBTB33	Q86T24	672 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	TBC1D1	Q86TI0	1168 aa	Predicted RBP	13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	PNMA8A	Q86V59	439 aa	Predicted RBP	13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	CEP57	Q86XR8	500 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	CYP4X1	Q8N118	509 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	KCTD6	Q8NC69	237 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	CMAS	Q8NFW8	434 aa	Predicted RBP	13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	AFG1L	Q8WV93	481 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	TMEM237	Q96Q45	408 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	LRRC37B	Q96QE4	947 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	CYTH2	Q99418	400 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	VPS11	Q9H270	941 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	ACSS3	Q9H6R3	686 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	PTPRH	Q9HD43	1115 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	DNAJC17	Q9NVM6	304 aa	Known RBP	13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	BAIAP2L1	Q9UHR4	511 aa		13.69	□□□□□ -0.22
CPSF7-223	ENST00000544669	UNC5C	O95185	931 aa		13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	STAU1	O95793	577 aa	Known RBP	13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	IFNB1	P01574	187 aa		13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	GSTA2	P09210	222 aa		13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	HOXC6	P09630	235 aa		13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	SRGAP2C	P0DJJ0	459 aa		13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	MCF2	P10911	925 aa		13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	MSH2	P43246	934 aa		13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	PHKA2	P46019	1235 aa		13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	ZNF252P-AS1	Q0IIN9	211 aa		13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	UBAP2	Q5T6F2	1119 aa	Known RBP	13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	LLGL2	Q6P1M3	1020 aa		13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	SLC4A11	Q8NBS3	891 aa		13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	RSRC1	Q96IZ7	334 aa	Known RBP	13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	SPATC1L	Q9H0A9	340 aa		13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	XYLT2	Q9H1B5	865 aa		13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	PHTF1	Q9UMS5	762 aa		13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	CSAD	Q9Y600	493 aa		13.68	□□□□□ -0.22
CPSF7-223	ENST00000544669	CST8	O60676	142 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	CTCF	P49711	727 aa	Predicted RBP	13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	IRX3	P78415	501 aa	Predicted RBP	13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	OTUD4	Q01804	1114 aa	Known RBP	13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	CNTN2	Q02246	1040 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	SLC25A11	Q02978	314 aa	Known RBP	13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	PPARD	Q03181	441 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	MPP2	Q14168	576 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	PDK2	Q15119	407 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	SPRED3	Q2MJR0	410 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	WDR72	Q3MJ13	1102 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	ATP13A4	Q4VNC1	1196 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	ZNF484	Q5JVG2	852 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	CELF3	Q5SZQ8	465 aa	Known RBP	13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	TRIM42	Q8IWZ5	723 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	WDTC1	Q8N5D0	677 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	NAT8L	Q8N9F0	302 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	ACTL9	Q8TC94	416 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	ELMO3	Q96BJ8	720 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	HAUS1	Q96CS2	278 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	PAIP2	Q9BPZ3	127 aa	Known RBP	13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	CD248	Q9HCU0	757 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	NOP53	Q9NZM5	478 aa	Known RBP	13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	FER1L6	Q2WGJ9	1857 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	C3orf70	A6NLC5	250 aa	Predicted RBP	13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	ZNF487	B1APH4	448 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669		E7ENQ6	273 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	ABLIM1	O14639	778 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	EDF1	O60869	148 aa	Known RBP	13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	LRCH4	O75427	683 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	ZNF189	O75820	626 aa	Predicted RBP	13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	CREB1	P16220	341 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	RFC1	P35251	1148 aa	Predicted RBP	13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	TNFSF9	P41273	254 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	BOLA3	Q53S33	107 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	SLC45A4	Q5BKX6	768 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	C3orf62	Q6ZUJ4	267 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	ASRGL1	Q7L266	308 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	NCAPG2	Q86XI2	1143 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	FITM2	Q8N6M3	262 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	MCRS1	Q96EZ8	462 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	TMEM176A	Q96HP8	235 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	GPR20	Q99678	358 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	CNPY3	Q9BT09	278 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	TMEM121	Q9BTD3	319 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	DHRS4	Q9BTZ2	278 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	PRDM16	Q9HAZ2	1276 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	SAR1A	Q9NR31	198 aa		13.67	□□□□□ -0.22
CPSF7-223	ENST00000544669	RLF	Q13129	1914 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	SOWAHB	A6NEL2	793 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	INO80B-WBP1	J3KQ70	363 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	CXCL11	O14625	94 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	TYROBP	O43914	113 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	FAM155B	O75949	473 aa		13.66	□□□□□ -0.22
CPSF7-223	ENST00000544669	CETP	P11597	493 aa		13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms