RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 BDNFP23560 247 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 ASPAP45381 313 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 CACNA2D1P54289 1103 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 FKBP3Q00688 224 aaKnown RBP16.09■□□□□ 0.17
UBE3B-212ENST00000540230 CYP27A1Q02318 531 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 LRRC63Q05C16 580 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 ENPEPQ07075 957 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 ORC1Q13415 861 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 SGSM1Q2NKQ1 1148 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 TTI2Q6NXR4 508 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 TMEM150AQ86TG1 271 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 GPIHBP1Q8IV16 184 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 SCN4BQ8IWT1 228 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 FBXL6Q8N531 539 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 ZSCAN18Q8TBC5 510 aaPredicted RBP16.09■□□□□ 0.17
UBE3B-212ENST00000540230 MYCBPAPQ8TBZ2 947 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 SEMA4DQ92854 862 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 RSPRY1Q96DX4 576 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 FUBP3Q96I24 572 aaKnown RBP eCLIP16.09■□□□□ 0.17
UBE3B-212ENST00000540230 ATXN3LQ9H3M9 355 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 TMEM8AQ9HCN3 771 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 CA14Q9ULX7 337 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 CTNND2Q9UQB3 1225 aa16.09■□□□□ 0.17
UBE3B-212ENST00000540230 NUP210Q8TEM1 1887 aaPredicted RBP16.08■□□□□ 0.16
UBE3B-212ENST00000540230 CLDN5O00501 218 aa16.08■□□□□ 0.16
UBE3B-212ENST00000540230 ECI2O75521 394 aa16.08■□□□□ 0.16
UBE3B-212ENST00000540230 FAM163BP0C2L3 166 aa16.08■□□□□ 0.16
UBE3B-212ENST00000540230 NPR3P17342 541 aa16.08■□□□□ 0.16
UBE3B-212ENST00000540230 PTPN1P18031 435 aaKnown RBP16.08■□□□□ 0.16
UBE3B-212ENST00000540230 VIPR2P41587 438 aa16.08■□□□□ 0.16
UBE3B-212ENST00000540230 CBWD6Q4V339 395 aa16.08■□□□□ 0.16
UBE3B-212ENST00000540230 CBWD3Q5JTY5 395 aa16.08■□□□□ 0.16
UBE3B-212ENST00000540230 CBWD5Q5RIA9 395 aa16.08■□□□□ 0.16
UBE3B-212ENST00000540230 CWF19L1Q69YN2 538 aaKnown RBP16.08■□□□□ 0.16
UBE3B-212ENST00000540230 CLEC17AQ6ZS10 378 aa16.08■□□□□ 0.16
UBE3B-212ENST00000540230 SIX5Q8N196 739 aa16.08■□□□□ 0.16
UBE3B-212ENST00000540230 B3GALNT2Q8NCR0 500 aa16.08■□□□□ 0.16
UBE3B-212ENST00000540230 NELFBQ8WX92 580 aa16.08■□□□□ 0.16
UBE3B-212ENST00000540230 DHTKD1Q96HY7 919 aaPredicted RBP16.08■□□□□ 0.16
UBE3B-212ENST00000540230 SLITRK6Q9H5Y7 841 aa16.08■□□□□ 0.16
UBE3B-212ENST00000540230 KIAA1468Q9P260 1216 aa16.08■□□□□ 0.16
UBE3B-212ENST00000540230 MAGEC2Q9UBF1 373 aaPredicted RBP16.08■□□□□ 0.16
UBE3B-212ENST00000540230 FBXL21Q9UKT6 434 aa16.08■□□□□ 0.16
UBE3B-212ENST00000540230 MAGED2Q9UNF1 606 aaPredicted RBP16.08■□□□□ 0.16
UBE3B-212ENST00000540230 SLC38A8A6NNN8 435 aa16.07■□□□□ 0.16
UBE3B-212ENST00000540230 SLC16A3O15427 465 aaKnown RBP16.07■□□□□ 0.16
UBE3B-212ENST00000540230 TADA3O75528 432 aa16.07■□□□□ 0.16
UBE3B-212ENST00000540230 F11P03951 625 aa16.07■□□□□ 0.16
UBE3B-212ENST00000540230 MXI1P50539 228 aa16.07■□□□□ 0.16
UBE3B-212ENST00000540230 STX17P56962 302 aa16.07■□□□□ 0.16
UBE3B-212ENST00000540230 NOP14P78316 857 aaKnown RBP16.07■□□□□ 0.16
UBE3B-212ENST00000540230 STIM1Q13586 685 aa16.07■□□□□ 0.16
UBE3B-212ENST00000540230 GRM2Q14416 872 aa16.07■□□□□ 0.16
UBE3B-212ENST00000540230 DCAF17Q5H9S7 520 aaPredicted RBP16.07■□□□□ 0.16
UBE3B-212ENST00000540230 KRT39Q6A163 491 aa16.07■□□□□ 0.16
UBE3B-212ENST00000540230 VITQ6UXI7 678 aa16.07■□□□□ 0.16
UBE3B-212ENST00000540230 C4orf50Q6ZRC1 276 aa16.07■□□□□ 0.16
UBE3B-212ENST00000540230 TAF4BQ92750 862 aa16.07■□□□□ 0.16
UBE3B-212ENST00000540230 SMARCD2Q92925 531 aa16.07■□□□□ 0.16
UBE3B-212ENST00000540230 ELSPBP1Q96BH3 223 aa16.07■□□□□ 0.16
UBE3B-212ENST00000540230 B3GNT5Q9BYG0 378 aa16.07■□□□□ 0.16
UBE3B-212ENST00000540230 GTPBP4Q9BZE4 634 aaKnown RBP16.07■□□□□ 0.16
UBE3B-212ENST00000540230 ZNF518BQ9C0D4 1074 aa16.07■□□□□ 0.16
UBE3B-212ENST00000540230 SLC2A4RGQ9NR83 387 aa16.07■□□□□ 0.16
UBE3B-212ENST00000540230 NOL4O94818 638 aa16.06■□□□□ 0.16
UBE3B-212ENST00000540230 COL4A2P08572 1712 aa16.06■□□□□ 0.16
UBE3B-212ENST00000540230 MAGEA11P43364 429 aa16.06■□□□□ 0.16
UBE3B-212ENST00000540230 NDST1P52848 882 aa16.06■□□□□ 0.16
UBE3B-212ENST00000540230 NLRP12P59046 1061 aa16.06■□□□□ 0.16
UBE3B-212ENST00000540230 RPL10AP62906 217 aaKnown RBP16.06■□□□□ 0.16
UBE3B-212ENST00000540230 MAPRE1Q15691 268 aaKnown RBP16.06■□□□□ 0.16
UBE3B-212ENST00000540230 TAF12Q16514 161 aa16.06■□□□□ 0.16
UBE3B-212ENST00000540230 GPR158Q5T848 1215 aa16.06■□□□□ 0.16
UBE3B-212ENST00000540230 TCERG1LQ5VWI1 586 aa16.06■□□□□ 0.16
UBE3B-212ENST00000540230 SUGP1Q8IWZ8 645 aaKnown RBP16.06■□□□□ 0.16
UBE3B-212ENST00000540230 TWNKQ96RR1 684 aa16.06■□□□□ 0.16
UBE3B-212ENST00000540230 BCO2Q9BYV7 579 aa16.06■□□□□ 0.16
UBE3B-212ENST00000540230 ZFP14Q9HCL3 533 aa16.06■□□□□ 0.16
UBE3B-212ENST00000540230 LMBRD1Q9NUN5 540 aa16.06■□□□□ 0.16
UBE3B-212ENST00000540230 WNT16Q9UBV4 365 aa16.06■□□□□ 0.16
UBE3B-212ENST00000540230 ANAPC1Q9H1A4 1944 aa16.06■□□□□ 0.16
UBE3B-212ENST00000540230 PRAMEF12O95522 483 aa16.05■□□□□ 0.16
UBE3B-212ENST00000540230 CSH1P0DML2 217 aa16.05■□□□□ 0.16
UBE3B-212ENST00000540230 CSH2P0DML3 217 aa16.05■□□□□ 0.16
UBE3B-212ENST00000540230 CDC25CP30307 473 aa16.05■□□□□ 0.16
UBE3B-212ENST00000540230 GTF2H1P32780 548 aa16.05■□□□□ 0.16
UBE3B-212ENST00000540230 USP46P62068 366 aa16.05■□□□□ 0.16
UBE3B-212ENST00000540230 VSTM1Q6UX27 236 aa16.05■□□□□ 0.16
UBE3B-212ENST00000540230 PAQR9Q6ZVX9 377 aa16.05■□□□□ 0.16
UBE3B-212ENST00000540230 ACOT1Q86TX2 421 aa16.05■□□□□ 0.16
UBE3B-212ENST00000540230 ARID3BQ8IVW6 561 aaPredicted RBP16.05■□□□□ 0.16
UBE3B-212ENST00000540230 TMEM105Q8N8V8 129 aa16.05■□□□□ 0.16
UBE3B-212ENST00000540230 FLCNQ8NFG4 579 aa16.05■□□□□ 0.16
UBE3B-212ENST00000540230 SLC35C1Q96A29 364 aa16.05■□□□□ 0.16
UBE3B-212ENST00000540230 LRRC3BQ96PB8 259 aa16.05■□□□□ 0.16
UBE3B-212ENST00000540230 SMG9Q9H0W8 520 aaKnown RBP16.05■□□□□ 0.16
UBE3B-212ENST00000540230 CLSTN2Q9H4D0 955 aa16.05■□□□□ 0.16
UBE3B-212ENST00000540230 TRPV4Q9HBA0 871 aa16.05■□□□□ 0.16
UBE3B-212ENST00000540230 ZNF638Q14966 1978 aaKnown RBP16.05■□□□□ 0.16
UBE3B-212ENST00000540230 HEPACAM2A8MVW5 462 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms