RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 CCDC28BQ9BUN5 200 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 SARGQ9BW04 601 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 NYXQ9GZU5 481 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 RNF39Q9H2S5 420 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 SP140LQ9H930 580 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 ZNF408Q9H9D4 720 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 POLE3Q9NRF9 147 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 ARHGAP28Q9P2N2 729 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 KCNN3Q9UGI6 736 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 RBMX2Q9Y388 322 aaKnown RBP7.58□□□□□ -1.2
NIPBL-208ENST00000514335 AP1M2Q9Y6Q5 423 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 ANKRD36BQ8N2N9 1353 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 M0R3H8 397 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 LILRB5O75023 590 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 ATP6V1G2O95670 118 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 TRHRP34981 398 aaPredicted RBP7.58□□□□□ -1.2
NIPBL-208ENST00000514335 PPARDQ03181 441 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 AP3B2Q13367 1082 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 PEX6Q13608 980 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 SMTNL2Q2TAL5 461 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.58□□□□□ -1.2
NIPBL-208ENST00000514335 LRIT3Q3SXY7 679 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 LEXMQ3ZCV2 418 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 RHOUQ7L0Q8 258 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 HEATR4Q86WZ0 1026 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 ANKS4BQ8N8V4 417 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 AVL9Q8NBF6 648 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 CEP76Q8TAP6 659 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 SYTL5Q8TDW5 730 aaPredicted RBP7.58□□□□□ -1.2
NIPBL-208ENST00000514335 AZIN2Q96A70 460 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 EFHD2Q96C19 240 aaPredicted RBP7.58□□□□□ -1.2
NIPBL-208ENST00000514335 NMD3Q96D46 503 aaKnown RBP7.58□□□□□ -1.2
NIPBL-208ENST00000514335 ASB2Q96Q27 587 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 CRBNQ96SW2 442 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 ZFP57Q9NU63 452 aa7.58□□□□□ -1.2
NIPBL-208ENST00000514335 CPSF3Q9UKF6 684 aaKnown RBP7.58□□□□□ -1.2
NIPBL-208ENST00000514335 PLEKHH1Q9ULM0 1364 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.57□□□□□ -1.2
NIPBL-208ENST00000514335 ACOD1A6NK06 481 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 H3BQV1 296 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 H3BRB1 525 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 PSMD11O00231 422 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 ECE2O60344 883 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 SHOX2O60902 331 aaPredicted RBP7.57□□□□□ -1.2
NIPBL-208ENST00000514335 URI1O94763 535 aaPredicted RBP7.57□□□□□ -1.2
NIPBL-208ENST00000514335 CLPTM1O96005 669 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 CHEK2O96017 543 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 ALBP02768 609 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 ASLP04424 464 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 ITGB1P05556 798 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 SP100P23497 879 aaPredicted RBP7.57□□□□□ -1.2
NIPBL-208ENST00000514335 CRABP2P29373 138 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 PRCPP42785 496 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 SLCO1A2P46721 670 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 GNL2Q13823 731 aaKnown RBP7.57□□□□□ -1.2
NIPBL-208ENST00000514335 PON2Q15165 354 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 FAM47CQ5HY64 1035 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 BTBD8Q5XKL5 378 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 FOXR2Q6PJQ5 311 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 MARK2Q7KZI7 788 aaKnown RBP7.57□□□□□ -1.2
NIPBL-208ENST00000514335 ZNF677Q86XU0 584 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 ZNF366Q8N895 744 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 LRRC8CQ8TDW0 803 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 IQCDQ96DY2 449 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 CCDC138Q96M89 665 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 ADAD1Q96M93 576 aaKnown RBP7.57□□□□□ -1.2
NIPBL-208ENST00000514335 CDK5RAP1Q96SZ6 601 aaKnown RBP7.57□□□□□ -1.2
NIPBL-208ENST00000514335 PKP4Q99569 1192 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 ZBED2Q9BTP6 218 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 GCOM2Q9BZD3 368 aaPredicted RBP7.57□□□□□ -1.2
NIPBL-208ENST00000514335 EPC1Q9H2F5 836 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 BRD7Q9NPI1 651 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 COQ3Q9NZJ6 369 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 CPA4Q9UI42 421 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 PPIP5K1Q6PFW1 1433 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 SYN3O14994 580 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 PMM2O15305 246 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 KRT7P08729 469 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 CCR10P46092 362 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 RNF144AP50876 292 aaPredicted RBP7.57□□□□□ -1.2
NIPBL-208ENST00000514335 IST1P53990 364 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 ARHGAP8P85298 464 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 DNM1Q05193 864 aaKnown RBP7.57□□□□□ -1.2
NIPBL-208ENST00000514335 LSAMPQ13449 338 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 AOC3Q16853 763 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 LONRF2Q1L5Z9 754 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 XKR9Q5GH70 373 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 ZBTB41Q5SVQ8 909 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 ANO7Q6IWH7 933 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 ZNF574Q6ZN55 896 aaPredicted RBP7.57□□□□□ -1.2
NIPBL-208ENST00000514335 ANO5Q75V66 913 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 YTHDF3Q7Z739 585 aaKnown RBP7.57□□□□□ -1.2
NIPBL-208ENST00000514335 DPP9Q86TI2 863 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 TICAM1Q8IUC6 712 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 P3H2Q8IVL5 708 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 RASEFQ8IZ41 740 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 CNTD1Q8N815 330 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 TTC13Q8NBP0 860 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 RNF169Q8NCN4 708 aa7.57□□□□□ -1.2
NIPBL-208ENST00000514335 NAXEQ8NCW5 288 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms