RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 C1orf220Q5T0J3 134 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 TRIM74Q86UV6 250 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 TRIM73Q86UV7 250 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 RHPN2Q8IUC4 686 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 MAP4K3Q8IVH8 894 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 TMEM161BQ8NDZ6 487 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 SH3TC2Q8TF17 1288 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 C10orf82Q8WW14 230 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 MTBPQ96DY7 904 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 DDX18Q9NVP1 670 aaKnown RBP10.12□□□□□ -0.79
VCAN-210ENST00000513960 SMAPO00193 183 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 HNRNPRO43390 633 aaKnown RBP10.12□□□□□ -0.79
VCAN-210ENST00000513960 PGM3O95394 542 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 NR3C2P08235 984 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 AP2B1P63010 937 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 BASP1P80723 227 aaKnown RBP10.12□□□□□ -0.79
VCAN-210ENST00000513960 GHRHRQ02643 423 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 RDM1Q8NG50 284 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 TMEM174Q8WUU8 243 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 ATG4CQ96DT6 458 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 KREMEN1Q96MU8 473 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 TUBGCP5Q96RT8 1024 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 FHDC1Q9C0D6 1143 aaPredicted RBP10.12□□□□□ -0.79
VCAN-210ENST00000513960 LRRC19Q9H756 370 aa10.12□□□□□ -0.79
VCAN-210ENST00000513960 TOPORSQ9NS56 1045 aaPredicted RBP10.12□□□□□ -0.79
VCAN-210ENST00000513960 PSMC3IPQ9P2W1 217 aaPredicted RBP10.12□□□□□ -0.79
VCAN-210ENST00000513960 BHMG1C9JSJ3 638 aaPredicted RBP10.11□□□□□ -0.79
VCAN-210ENST00000513960 SPECC1L-ADORA2AF8WAN1 911 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 FCHO1O14526 889 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 PMM2O15305 246 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 LYNP07948 512 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 ATP6V1B1P15313 513 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 RTP1P59025 263 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 PTK6Q13882 451 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 DBN1Q16643 649 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 LIN9Q5TKA1 542 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 RIBC1Q8N443 379 aaPredicted RBP10.11□□□□□ -0.79
VCAN-210ENST00000513960 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.11□□□□□ -0.79
VCAN-210ENST00000513960 MIPOL1Q8TD10 442 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 NRG4Q8WWG1 115 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 SHC3Q92529 594 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 TRAPPC9Q96Q05 1148 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 MAK16Q9BXY0 300 aaKnown RBP10.11□□□□□ -0.79
VCAN-210ENST00000513960 SLC13A1Q9BZW2 595 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 SLC17A7Q9P2U7 560 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 GTF3C4Q9UKN8 822 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 INHBAP08476 426 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 CYP11B1P15538 503 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 ADSSP30520 456 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 PHBP35232 272 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 PSMC4P43686 418 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 TFDP1Q14186 410 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 CNPY1Q3B7I2 92 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 ATP13A4Q4VNC1 1196 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 SLC45A4Q5BKX6 768 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 XRRA1Q6P2D8 792 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 DCUN1D2Q6PH85 259 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 ANO5Q75V66 913 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 ALYREFQ86V81 257 aaKnown RBP10.11□□□□□ -0.79
VCAN-210ENST00000513960 DRAXINQ8NBI3 349 aaPredicted RBP10.11□□□□□ -0.79
VCAN-210ENST00000513960 TAS1R2Q8TE23 839 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 PYDC1Q8WXC3 89 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 SEMA4DQ92854 862 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 MPP4Q96JB8 637 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 DNAJC1Q96KC8 554 aaKnown RBP10.11□□□□□ -0.79
VCAN-210ENST00000513960 C17orf75Q9HAS0 396 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 PICK1Q9NRD5 415 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 SEPT9Q9UHD8 586 aaPredicted RBP10.11□□□□□ -0.79
VCAN-210ENST00000513960 PGAP2Q9UHJ9 254 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 ZNF646O15015 1829 aaPredicted RBP10.11□□□□□ -0.79
VCAN-210ENST00000513960 LOXHD1Q8IVV2 1947 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 FAM237BA0A1B0GVD1 139 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 VWA5AO00534 786 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 MAFGO15525 162 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 HARSP12081 509 aaKnown RBP10.11□□□□□ -0.79
VCAN-210ENST00000513960 RASA2Q15283 850 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 SNRNP48Q6IEG0 339 aaKnown RBP10.11□□□□□ -0.79
VCAN-210ENST00000513960 SWSAP1Q6NVH7 229 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 ARID3BQ8IVW6 561 aaPredicted RBP10.11□□□□□ -0.79
VCAN-210ENST00000513960 MCPH1Q8NEM0 835 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 TMC2Q8TDI7 906 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 GPRASP2Q96D09 838 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 PDGFDQ9GZP0 370 aaPredicted RBP10.11□□□□□ -0.79
VCAN-210ENST00000513960 GALNT8Q9NY28 637 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 UVRAGQ9P2Y5 699 aa10.11□□□□□ -0.79
VCAN-210ENST00000513960 NOCTQ9UK39 431 aaKnown RBP10.11□□□□□ -0.79
VCAN-210ENST00000513960 A6NJR5 290 aa10.1□□□□□ -0.79
VCAN-210ENST00000513960 PSAPP07602 524 aa10.1□□□□□ -0.79
VCAN-210ENST00000513960 HNRNPCP07910 306 aaKnown RBP eCLIP10.1□□□□□ -0.79
VCAN-210ENST00000513960 SOX10P56693 466 aa10.1□□□□□ -0.79
VCAN-210ENST00000513960 MED21Q13503 144 aa10.1□□□□□ -0.79
VCAN-210ENST00000513960 SGSM1Q2NKQ1 1148 aa10.1□□□□□ -0.79
VCAN-210ENST00000513960 C3orf62Q6ZUJ4 267 aa10.1□□□□□ -0.79
VCAN-210ENST00000513960 GPD1LQ8N335 351 aa10.1□□□□□ -0.79
VCAN-210ENST00000513960 EFCAB3Q8N7B9 438 aa10.1□□□□□ -0.79
VCAN-210ENST00000513960 NSUN6Q8TEA1 469 aaKnown RBP10.1□□□□□ -0.79
VCAN-210ENST00000513960 ZBED3Q96IU2 234 aaPredicted RBP10.1□□□□□ -0.79
VCAN-210ENST00000513960 ACAP3Q96P50 834 aa10.1□□□□□ -0.79
VCAN-210ENST00000513960 HERPUD2Q9BSE4 406 aa10.1□□□□□ -0.79
VCAN-210ENST00000513960 AS3MTQ9HBK9 375 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms