RNA–Protein interactions for RNA: ENST00000494546.1

CBX4-203, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-203ENST00000494546 TMC2Q8TDI7 906 aa35.5■■■■□ 3.27
CBX4-203ENST00000494546 IRF7Q92985 503 aa35.5■■■■□ 3.27
CBX4-203ENST00000494546 DDX23Q9BUQ8 820 aaKnown RBP35.5■■■■□ 3.27
CBX4-203ENST00000494546 DPYSL4O14531 572 aa35.49■■■■□ 3.27
CBX4-203ENST00000494546 ZNF263O14978 683 aa35.49■■■■□ 3.27
CBX4-203ENST00000494546 CD72P21854 359 aa35.49■■■■□ 3.27
CBX4-203ENST00000494546 HOXD11P31277 338 aaPredicted RBP35.49■■■■□ 3.27
CBX4-203ENST00000494546 CYP27A1Q02318 531 aa35.49■■■■□ 3.27
CBX4-203ENST00000494546 FAM160A1Q05DH4 1040 aa35.49■■■■□ 3.27
CBX4-203ENST00000494546 UBXN2BQ14CS0 331 aa35.49■■■■□ 3.27
CBX4-203ENST00000494546 MAPRE1Q15691 268 aaKnown RBP35.49■■■■□ 3.27
CBX4-203ENST00000494546 ALYREFQ86V81 257 aaKnown RBP35.49■■■■□ 3.27
CBX4-203ENST00000494546 YAF2Q8IY57 180 aa35.49■■■■□ 3.27
CBX4-203ENST00000494546 ENGASEQ8NFI3 743 aa35.49■■■■□ 3.27
CBX4-203ENST00000494546 NME7Q9Y5B8 376 aa35.49■■■■□ 3.27
CBX4-203ENST00000494546 FAM163BP0C2L3 166 aa35.48■■■■□ 3.27
CBX4-203ENST00000494546 NLRP12P59046 1061 aa35.48■■■■□ 3.27
CBX4-203ENST00000494546 NFIL3Q16649 462 aa35.48■■■■□ 3.27
CBX4-203ENST00000494546 ELMO3Q96BJ8 720 aa35.48■■■■□ 3.27
CBX4-203ENST00000494546 RMND1Q9NWS8 449 aa35.48■■■■□ 3.27
CBX4-203ENST00000494546 SLC38A8A6NNN8 435 aa35.47■■■■□ 3.27
CBX4-203ENST00000494546 LRRN2O75325 713 aa35.47■■■■□ 3.27
CBX4-203ENST00000494546 VNN1O95497 513 aa35.47■■■■□ 3.27
CBX4-203ENST00000494546 BDNFP23560 247 aa35.47■■■■□ 3.27
CBX4-203ENST00000494546 RPL13P26373 211 aaKnown RBP35.47■■■■□ 3.27
CBX4-203ENST00000494546 MAGEA11P43364 429 aa35.47■■■■□ 3.27
CBX4-203ENST00000494546 ZNF667Q5HYK9 610 aa35.47■■■■□ 3.27
CBX4-203ENST00000494546 MDH1BQ5I0G3 518 aa35.47■■■■□ 3.27
CBX4-203ENST00000494546 TMEM150AQ86TG1 271 aa35.47■■■■□ 3.27
CBX4-203ENST00000494546 MYCBPAPQ8TBZ2 947 aa35.47■■■■□ 3.27
CBX4-203ENST00000494546 PCED1BQ96HM7 432 aa35.47■■■■□ 3.27
CBX4-203ENST00000494546 SLC46A2Q9BY10 475 aa35.47■■■■□ 3.27
CBX4-203ENST00000494546 VRTNQ9H8Y1 702 aa35.47■■■■□ 3.27
CBX4-203ENST00000494546 A8MXQ7 604 aa35.46■■■■□ 3.27
CBX4-203ENST00000494546 AKAP3O75969 853 aa35.46■■■■□ 3.27
CBX4-203ENST00000494546 F11P03951 625 aa35.46■■■■□ 3.27
CBX4-203ENST00000494546 VAMP7P51809 220 aa35.46■■■■□ 3.27
CBX4-203ENST00000494546 DPEP3Q9H4B8 488 aa35.46■■■■□ 3.27
CBX4-203ENST00000494546 SMYD3Q9H7B4 428 aa35.46■■■■□ 3.27
CBX4-203ENST00000494546 UXTQ9UBK9 157 aaPredicted RBP35.46■■■■□ 3.27
CBX4-203ENST00000494546 MTF2Q9Y483 593 aaPredicted RBP35.46■■■■□ 3.27
CBX4-203ENST00000494546 MAPK13O15264 365 aa35.45■■■■□ 3.27
CBX4-203ENST00000494546 NOL4O94818 638 aa35.45■■■■□ 3.27
CBX4-203ENST00000494546 GRIK1P39086 918 aa35.45■■■■□ 3.27
CBX4-203ENST00000494546 MRE11P49959 708 aa35.45■■■■□ 3.27
CBX4-203ENST00000494546 CDH8P55286 799 aa35.45■■■■□ 3.27
CBX4-203ENST00000494546 ADAM9Q13443 819 aa35.45■■■■□ 3.27
CBX4-203ENST00000494546 ZACNQ401N2 412 aa35.45■■■■□ 3.27
CBX4-203ENST00000494546 SCARA5Q6ZMJ2 495 aa35.45■■■■□ 3.27
CBX4-203ENST00000494546 MAB21L3Q8N8X9 362 aa35.45■■■■□ 3.27
CBX4-203ENST00000494546 ERCC4Q92889 916 aaPredicted RBP35.45■■■■□ 3.27
CBX4-203ENST00000494546 SMG9Q9H0W8 520 aaKnown RBP35.45■■■■□ 3.27
CBX4-203ENST00000494546 LTB4R2Q9NPC1 389 aa35.45■■■■□ 3.27
CBX4-203ENST00000494546 DLGAP2Q9P1A6 1054 aa35.45■■■■□ 3.27
CBX4-203ENST00000494546 FAM170BA6NMN3 283 aa35.44■■■■□ 3.26
CBX4-203ENST00000494546 IKBKBO14920 756 aa35.44■■■■□ 3.26
CBX4-203ENST00000494546 SMC2O95347 1197 aa35.44■■■■□ 3.26
CBX4-203ENST00000494546 PRAMEF12O95522 483 aa35.44■■■■□ 3.26
CBX4-203ENST00000494546 PTPN1P18031 435 aaKnown RBP35.44■■■■□ 3.26
CBX4-203ENST00000494546 RAP1GAPP47736 663 aa35.44■■■■□ 3.26
CBX4-203ENST00000494546 ANGPT1Q15389 498 aa35.44■■■■□ 3.26
CBX4-203ENST00000494546 C1orf220Q5T0J3 134 aa35.44■■■■□ 3.26
CBX4-203ENST00000494546 VSTM1Q6UX27 236 aa35.44■■■■□ 3.26
CBX4-203ENST00000494546 ZNF852Q6ZMS4 543 aa35.44■■■■□ 3.26
CBX4-203ENST00000494546 INTS8Q75QN2 995 aaKnown RBP35.44■■■■□ 3.26
CBX4-203ENST00000494546 SV2AQ7L0J3 742 aa35.44■■■■□ 3.26
CBX4-203ENST00000494546 FAM186BQ8IYM0 893 aa35.44■■■■□ 3.26
CBX4-203ENST00000494546 MRPS31Q92665 395 aaKnown RBP35.44■■■■□ 3.26
CBX4-203ENST00000494546 LRRC3BQ96PB8 259 aa35.44■■■■□ 3.26
CBX4-203ENST00000494546 ZMYM5Q9UJ78 669 aa35.44■■■■□ 3.26
CBX4-203ENST00000494546 KRT13P13646 458 aa35.43■■■■□ 3.26
CBX4-203ENST00000494546 GLULP15104 373 aa35.43■■■■□ 3.26
CBX4-203ENST00000494546 PSMC2P35998 433 aaKnown RBP35.43■■■■□ 3.26
CBX4-203ENST00000494546 SGSM1Q2NKQ1 1148 aa35.43■■■■□ 3.26
CBX4-203ENST00000494546 ZCWPW2Q504Y3 356 aa35.43■■■■□ 3.26
CBX4-203ENST00000494546 CMTM8Q8IZV2 173 aa35.43■■■■□ 3.26
CBX4-203ENST00000494546 SMARCE1Q969G3 411 aa35.43■■■■□ 3.26
CBX4-203ENST00000494546 TRMT2BQ96GJ1 504 aaKnown RBP35.43■■■■□ 3.26
CBX4-203ENST00000494546 MYRFLQ96LU7 910 aa35.43■■■■□ 3.26
CBX4-203ENST00000494546 GSDMAQ96QA5 445 aa35.43■■■■□ 3.26
CBX4-203ENST00000494546 TRPV5Q9NQA5 729 aa35.43■■■■□ 3.26
CBX4-203ENST00000494546 OBP2AQ9NY56 170 aa35.43■■■■□ 3.26
CBX4-203ENST00000494546 TRIM49P0CI25 452 aa35.42■■■■□ 3.26
CBX4-203ENST00000494546 TRIM49CP0CI26 452 aa35.42■■■■□ 3.26
CBX4-203ENST00000494546 DDX6P26196 483 aaKnown RBP eCLIP35.42■■■■□ 3.263e-6■■■■□ 23.9
CBX4-203ENST00000494546 WEE1P30291 646 aa35.42■■■■□ 3.26
CBX4-203ENST00000494546 PIK3CAP42336 1068 aa35.42■■■■□ 3.26
CBX4-203ENST00000494546 FCHO2Q0JRZ9 810 aa35.42■■■■□ 3.26
CBX4-203ENST00000494546 TXNDC8Q6A555 127 aa35.42■■■■□ 3.26
CBX4-203ENST00000494546 CSGALNACT1Q8TDX6 532 aa35.42■■■■□ 3.26
CBX4-203ENST00000494546 TIGD1Q96MW7 591 aa35.42■■■■□ 3.26
CBX4-203ENST00000494546 HOOK1Q9UJC3 728 aaKnown RBP35.42■■■■□ 3.26
CBX4-203ENST00000494546 PCDHA5Q9Y5H7 936 aa35.42■■■■□ 3.26
CBX4-203ENST00000494546 CHADO15335 359 aa35.41■■■■□ 3.26
CBX4-203ENST00000494546 ANXA13P27216 316 aa35.41■■■■□ 3.26
CBX4-203ENST00000494546 AVPR1AP37288 418 aa35.41■■■■□ 3.26
CBX4-203ENST00000494546 PRCPP42785 496 aa35.41■■■■□ 3.26
CBX4-203ENST00000494546 EDRF1Q3B7T1 1238 aa35.41■■■■□ 3.26
CBX4-203ENST00000494546 ZNF658Q5TYW1 1059 aaPredicted RBP35.41■■■■□ 3.26
CBX4-203ENST00000494546 B3GALNT2Q8NCR0 500 aa35.41■■■■□ 3.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms