RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 CFAP52Q8N1V2 620 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 CCDC33Q8N5R6 958 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 DNAJC5GQ8N7S2 189 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 OR56A3Q8NH54 315 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 CAGE1Q8TC20 777 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 KBTBD7Q8WVZ9 684 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 SLC9A6Q92581 669 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 MED15Q96RN5 788 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 PSMD1Q99460 953 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 AIFM2Q9BRQ8 373 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 DPH1Q9BZG8 443 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 TINAGL1Q9GZM7 467 aaPredicted RBP4.29□□□□□ -1.72
VPS41-207ENST00000439468 UNKLQ9H9P5 680 aaKnown RBP4.29□□□□□ -1.72
VPS41-207ENST00000439468 PTPRHQ9HD43 1115 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 TMEM74BQ9NUR3 256 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 PTGFRNQ9P2B2 879 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 CDC23Q9UJX2 597 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 TLK1Q9UKI8 766 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 COMMD10Q9Y6G5 202 aa4.29□□□□□ -1.72
VPS41-207ENST00000439468 MAST3O60307 1309 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 TOR1BO14657 336 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 PEX1O43933 1283 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 ZFPL1O95159 310 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 IL18RAPO95256 599 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 GNAI2P04899 355 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 PARP1P09874 1014 aaKnown RBP4.28□□□□□ -1.72
VPS41-207ENST00000439468 TSHRP16473 764 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 TYRP1P17643 537 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 MPLP40238 635 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 DAG1Q14118 895 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 DCAF12L1Q5VU92 463 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 ZNF575Q86XF7 245 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 OR2C3Q8N628 320 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 ACTRT2Q8TDY3 377 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 SSH3Q8TE77 659 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 RAPGEF4Q8WZA2 1011 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 SCAMP4Q969E2 229 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 NMD3Q96D46 503 aaKnown RBP4.28□□□□□ -1.72
VPS41-207ENST00000439468 DUSP26Q9BV47 211 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 STK31Q9BXU1 1019 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 TTYH3Q9C0H2 523 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 SMOC2Q9H3U7 446 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 SYNPO2LQ9H987 977 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 PLCB1Q9NQ66 1216 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 TBC1D23Q9NUY8 699 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 RLIMQ9NVW2 624 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 KCTD5Q9NXV2 234 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 XPR1Q9UBH6 696 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 AFF4Q9UHB7 1163 aaKnown RBP4.28□□□□□ -1.72
VPS41-207ENST00000439468 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.28□□□□□ -1.72
VPS41-207ENST00000439468 PCDHGB2Q9Y5G2 931 aa4.28□□□□□ -1.72
VPS41-207ENST00000439468 ABHD14A-ACY1A0A1B0GW23 586 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 TRIM43BA6NCK2 446 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 MYADML2A6NDP7 307 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 PYCARD-AS1I3L0S3 204 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 SETSIPP0DME0 302 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 PIM1P11309 404 aaPredicted RBP4.27□□□□□ -1.73
VPS41-207ENST00000439468 HARSP12081 509 aaKnown RBP4.27□□□□□ -1.73
VPS41-207ENST00000439468 IL6STP40189 918 aaPredicted RBP4.27□□□□□ -1.73
VPS41-207ENST00000439468 PTH2RP49190 550 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 MC2RQ01718 297 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 FPGSQ05932 587 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 CHAF1AQ13111 956 aaPredicted RBP4.27□□□□□ -1.73
VPS41-207ENST00000439468 PMS2P11Q13670 270 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 SF3B3Q15393 1217 aaKnown RBP4.27□□□□□ -1.73
VPS41-207ENST00000439468 LMBRD2Q68DH5 695 aaPredicted RBP4.27□□□□□ -1.73
VPS41-207ENST00000439468 UNC13DQ70J99 1090 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 CLNKQ7Z7G1 428 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 ZNF280BQ86YH2 543 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 EXOC8Q8IYI6 725 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 SIMC1Q8NDZ2 872 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 MORC4Q8TE76 937 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 TRIM43Q96BQ3 446 aaPredicted RBP4.27□□□□□ -1.73
VPS41-207ENST00000439468 SUCLG2Q96I99 432 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 HEPHQ9BQS7 1158 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 PCGF6Q9BYE7 350 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 UNKQ9C0B0 810 aaKnown RBP4.27□□□□□ -1.73
VPS41-207ENST00000439468 CHST8Q9H2A9 424 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 CERS4Q9HA82 394 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 PNPLA8Q9NP80 782 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 ETAA1Q9NY74 926 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 TMX2Q9Y320 296 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 PLEKHM1Q9Y4G2 1056 aa4.27□□□□□ -1.73
VPS41-207ENST00000439468 SALL3Q9BXA9 1300 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 A0A087WWL8 130 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 LOC102724159A0A0B4J2E5 919 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 F5H423 210 aaPredicted RBP4.26□□□□□ -1.73
VPS41-207ENST00000439468 POLRMTO00411 1230 aaKnown RBP4.26□□□□□ -1.73
VPS41-207ENST00000439468 APOL1O14791 398 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 DCLK1O15075 740 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 ORC4O43929 436 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 MT-ND5P03915 603 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 ANXA1P04083 346 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 IL1R1P14778 569 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 KCNA2P16389 499 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 TRAPPC10P48553 1259 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 CLK3P49761 638 aaKnown RBP4.26□□□□□ -1.73
VPS41-207ENST00000439468 MRPS21P82921 87 aaKnown RBP4.26□□□□□ -1.73
VPS41-207ENST00000439468 PIGFQ07326 219 aa4.26□□□□□ -1.73
VPS41-207ENST00000439468 PWP2Q15269 919 aaKnown RBP4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms