RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 IRF2BP2Q7Z5L9 587 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 OSTM1Q86WC4 334 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 GLYCTKQ8IVS8 523 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 RNF168Q8IYW5 571 aaPredicted RBP10.7□□□□□ -0.7
CD44-207ENST00000425428 ELMOD1Q8N336 334 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 SLC2A14Q8TDB8 520 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 EPS8L1Q8TE68 723 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 HNRNPABQ99729 332 aaKnown RBP10.7□□□□□ -0.7
CD44-207ENST00000425428 GPR88Q9GZN0 384 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 ZNF576Q9H609 170 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 NHEJ1Q9H9Q4 299 aaPredicted RBP10.7□□□□□ -0.7
CD44-207ENST00000425428 ABCB6Q9NP58 842 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 AJAP1Q9UKB5 411 aaPredicted RBP10.7□□□□□ -0.7
CD44-207ENST00000425428 TSPAN16Q9UKR8 245 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 IRAK3Q9Y616 596 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 RNF225M0QZC1 329 aaPredicted RBP10.7□□□□□ -0.7
CD44-207ENST00000425428 ARHGAP6O43182 974 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 AP1G2O75843 785 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 CSPG5O95196 566 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 GLUD1P00367 558 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 EIF4A3P38919 411 aaKnown RBP10.7□□□□□ -0.7
CD44-207ENST00000425428 VEPH1Q14D04 833 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 PTPN14Q15678 1187 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 MGAT5BQ3V5L5 792 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 PPP1R26Q5T8A7 1209 aaPredicted RBP10.7□□□□□ -0.7
CD44-207ENST00000425428 SLC8B1Q6J4K2 584 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 FAM171BQ6P995 826 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 LCLAT1Q6UWP7 414 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 MRPL43Q8N983 215 aaKnown RBP10.7□□□□□ -0.7
CD44-207ENST00000425428 C12orf29Q8N999 325 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 ANKRD52Q8NB46 1076 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 ZNF461Q8TAF7 563 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 WHAMMQ8TF30 809 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 MYLPFQ96A32 169 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 TRIM11Q96F44 468 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 DPEP3Q9H4B8 488 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 HSFX1Q9UBD0 423 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 HMGXB4Q9UGU5 601 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 AFF4Q9UHB7 1163 aaKnown RBP10.7□□□□□ -0.7
CD44-207ENST00000425428 PCDHGC3Q9UN70 934 aa10.7□□□□□ -0.7
CD44-207ENST00000425428 MYBPHLA2RUH7 354 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 GRM6O15303 877 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 CCP110O43303 1012 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 ATP2C2O75185 946 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 MICAL2O94851 1124 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 C1RP00736 705 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 CCDC130P13994 396 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 NPR3P17342 541 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 IGFBP6P24592 240 aaPredicted RBP10.69□□□□□ -0.7
CD44-207ENST00000425428 ACADSBP45954 432 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 GOLGA8FQ08AF8 430 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 GOLGA8DPQ0D2H9 430 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 RAB33AQ14088 237 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 CFAP221Q4G0U5 840 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 RTL10Q7L3V2 364 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 NOP9Q86U38 636 aaKnown RBP10.69□□□□□ -0.7
CD44-207ENST00000425428 SCN4BQ8IWT1 228 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 OR10T2Q8NGX3 314 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 GOLGA1Q92805 767 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 PCED1BQ96HM7 432 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 TWNKQ96RR1 684 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 GAS2L1Q99501 681 aaPredicted RBP10.69□□□□□ -0.7
CD44-207ENST00000425428 CDCA3Q99618 268 aaPredicted RBP10.69□□□□□ -0.7
CD44-207ENST00000425428 DUSP16Q9BY84 665 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 LHX5Q9H2C1 402 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 PRO3102Q9H379 93 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 TLE6Q9H808 572 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 CYP4F11Q9HBI6 524 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 LRRC4Q9HBW1 653 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 RXFP1Q9HBX9 757 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 DMAP1Q9NPF5 467 aaPredicted RBP10.69□□□□□ -0.7
CD44-207ENST00000425428 ST7Q9NRC1 585 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 KRT82Q9NSB4 513 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 ADAMTS1Q9UHI8 967 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 STRIP2Q9ULQ0 834 aa10.69□□□□□ -0.7
CD44-207ENST00000425428 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.69□□□□□ -0.7
CD44-207ENST00000425428 ANKRD62A6NC57 917 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 O00370 1275 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 EFEMP2O95967 443 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 LRG1P02750 347 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 MMEP08473 750 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 LINC00271P0C7V0 271 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 GZMAP12544 262 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 BDNFP23560 247 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 KIF11P52732 1056 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 ROR1Q01973 937 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 ADCY1Q08828 1119 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 SLC18A3Q16572 532 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 CCDC122Q5T0U0 273 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 KIAA1328Q86T90 577 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 FAM35AQ86V20 835 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 ERICH1Q86X53 443 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 PALB2Q86YC2 1186 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 GPIHBP1Q8IV16 184 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 AUTS2Q8WXX7 1259 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 MRPL38Q96DV4 380 aaKnown RBP10.68□□□□□ -0.7
CD44-207ENST00000425428 CEP295NLQ96MC4 621 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 PGLYRP2Q96PD5 576 aa10.68□□□□□ -0.7
CD44-207ENST00000425428 SEPT5Q99719 369 aaPredicted RBP10.68□□□□□ -0.7
CD44-207ENST00000425428 CRTAC1Q9NQ79 661 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms