RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 WHAMMQ8TF30 809 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 KRT12Q99456 494 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 ELOVL4Q9GZR5 314 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 LRFN2Q9ULH4 789 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 BARX2Q9UMQ3 279 aaPredicted RBP13.16□□□□□ -0.3
CIITA-202ENST00000381835 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.16□□□□□ -0.3
CIITA-202ENST00000381835 TRIM43BA6NCK2 446 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 FTLP02792 175 aaPredicted RBP13.16□□□□□ -0.3
CIITA-202ENST00000381835 UPP1Q16831 310 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 PAN2Q504Q3 1202 aaKnown RBP13.16□□□□□ -0.3
CIITA-202ENST00000381835 NOMO2Q5JPE7 1267 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 KDM7AQ6ZMT4 941 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 DPH6Q7L8W6 267 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 SUGP1Q8IWZ8 645 aaKnown RBP13.16□□□□□ -0.3
CIITA-202ENST00000381835 ABI1Q8IZP0 508 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 SLC4A11Q8NBS3 891 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 C3orf58Q8NDZ4 430 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 APPL2Q8NEU8 664 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 OR6B3Q8NGW1 331 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 URGCPQ8TCY9 931 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 TFAP2BQ92481 460 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 TRIM43Q96BQ3 446 aaPredicted RBP13.16□□□□□ -0.3
CIITA-202ENST00000381835 TMEM176AQ96HP8 235 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 GDAP2Q9NXN4 497 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 GRID2IPA4D2P6 1211 aa13.15□□□□□ -0.3
CIITA-202ENST00000381835 HUS1O60921 280 aa13.15□□□□□ -0.3
CIITA-202ENST00000381835 KIAA0754O94854 1291 aa13.15□□□□□ -0.3
CIITA-202ENST00000381835 RAG1P15918 1043 aa13.15□□□□□ -0.3
CIITA-202ENST00000381835 RPL9P32969 192 aaKnown RBP13.15□□□□□ -0.3
CIITA-202ENST00000381835 RNASE9P60153 205 aaKnown RBP13.15□□□□□ -0.3
CIITA-202ENST00000381835 RNASELQ05823 741 aaKnown RBP13.15□□□□□ -0.3
CIITA-202ENST00000381835 INCA1Q0VD86 236 aa13.15□□□□□ -0.3
CIITA-202ENST00000381835 TUSC3Q13454 348 aa13.15□□□□□ -0.3
CIITA-202ENST00000381835 HASPINQ8TF76 798 aa13.15□□□□□ -0.3
CIITA-202ENST00000381835 CPA5Q8WXQ8 436 aa13.15□□□□□ -0.3
CIITA-202ENST00000381835 CYFIP2Q96F07 1278 aa13.15□□□□□ -0.3
CIITA-202ENST00000381835 HEXIM2Q96MH2 286 aaKnown RBP13.15□□□□□ -0.3
CIITA-202ENST00000381835 ZSWIM1Q9BR11 485 aa13.15□□□□□ -0.3
CIITA-202ENST00000381835 CYB561D2O14569 222 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 RTN2O75298 545 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 B3GAT3O94766 335 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 TIMP1P01033 207 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 GZMAP12544 262 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 GATMP50440 423 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 CLEC16AQ2KHT3 1053 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 MEI1Q5TIA1 1274 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 ZNF280BQ86YH2 543 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 CASKIN2Q8WXE0 1202 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 RNPC3Q96LT9 517 aaKnown RBP13.14□□□□□ -0.31
CIITA-202ENST00000381835 NT5C1AQ9BXI3 368 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 THAP2Q9H0W7 228 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 ISCUQ9H1K1 167 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 ELAC1Q9H777 363 aaKnown RBP13.14□□□□□ -0.31
CIITA-202ENST00000381835 PACSIN2Q9UNF0 486 aaPredicted RBP13.14□□□□□ -0.31
CIITA-202ENST00000381835 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.14□□□□□ -0.31
CIITA-202ENST00000381835 HCRTO43612 131 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 DDHD2O94830 711 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 UPP2O95045 317 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 PAEPP09466 180 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 CSF2RAP15509 400 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 IKBKEQ14164 716 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 NAA35Q5VZE5 725 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 MREGQ8N565 214 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 TTC39CQ8N584 583 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 CTNNBL1Q8WYA6 563 aaPredicted RBP13.14□□□□□ -0.31
CIITA-202ENST00000381835 SENP8Q96LD8 212 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 TBC1D13Q9NVG8 400 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 NME7Q9Y5B8 376 aa13.14□□□□□ -0.31
CIITA-202ENST00000381835 LAMA2P24043 3122 aaKnown RBP13.14□□□□□ -0.31
CIITA-202ENST00000381835 ANKRD62A6NC57 917 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 A8MXQ7 604 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 I3L4J1 428 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 INPPL1O15357 1258 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 B4GALT3O60512 393 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 PDGFRBP09619 1106 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 UNGP13051 313 aaPredicted RBP13.13□□□□□ -0.31
CIITA-202ENST00000381835 NR1D1P20393 614 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 LSP1P33241 339 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 GNL1P36915 607 aaPredicted RBP13.13□□□□□ -0.31
CIITA-202ENST00000381835 GUCY1A3Q02108 690 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 FBXW10Q5XX13 1052 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 CNKSR3Q6P9H4 555 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 DSTYKQ6XUX3 929 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.13□□□□□ -0.31
CIITA-202ENST00000381835 ACOT1Q86TX2 421 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 SPATS2Q86XZ4 545 aaKnown RBP13.13□□□□□ -0.31
CIITA-202ENST00000381835 ADGRF2Q8IZF7 708 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 OTUD6BQ8N6M0 293 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 KBTBD7Q8WVZ9 684 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 PIK3R5Q8WYR1 880 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 VWCEQ96DN2 955 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 DDX27Q96GQ7 796 aaKnown RBP13.13□□□□□ -0.31
CIITA-202ENST00000381835 FAM193BQ96PV7 902 aaPredicted RBP13.13□□□□□ -0.31
CIITA-202ENST00000381835 SNX25Q9H3E2 840 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 INTUQ9ULD6 942 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 CLGNO14967 610 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 KIAA0355O15063 1070 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 LMO2P25791 158 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 C2CD6Q53TS8 623 aa13.13□□□□□ -0.31
CIITA-202ENST00000381835 WSCD1Q658N2 575 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms