RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 NFIL3Q16649 462 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 SH3D19Q5HYK7 790 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 ANKRD23Q86SG2 305 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 NT5DC4Q86YG4 428 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 ARHGAP24Q8N264 748 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 EXD1Q8NHP7 514 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 XPNPEP1Q9NQW7 623 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 MAFBQ9Y5Q3 323 aaPredicted RBP15.19■□□□□ 0.02
TCOF1-202ENST00000377797 DFFAO00273 331 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 EEF2KO00418 725 aaKnown RBP15.19■□□□□ 0.02
TCOF1-202ENST00000377797 AXLP30530 894 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 NXNQ6DKJ4 435 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 FAM47EQ6ZV65 393 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 FAM71DQ8N9W8 422 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 FBXO25Q8TCJ0 367 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 AVENQ9NQS1 362 aaPredicted RBP15.19■□□□□ 0.02
TCOF1-202ENST00000377797 DDIT4Q9NX09 232 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 GJB6O95452 261 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 PYGMP11217 842 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 SLC29A2Q14542 456 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 LRRC14Q15048 493 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 MGAT5BQ3V5L5 792 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 SPRYD7Q5W111 196 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 DAW1Q8N136 415 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 FAM172AQ8WUF8 416 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 SEMA4DQ92854 862 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 RNPEPQ9H4A4 650 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 PDE2AO00408 941 aaPredicted RBP15.19■□□□□ 0.02
TCOF1-202ENST00000377797 DHX15O43143 795 aaKnown RBP15.19■□□□□ 0.02
TCOF1-202ENST00000377797 POMCP01189 267 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 GUCY1A3Q02108 690 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 PPTC7Q8NI37 304 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 SEPT5Q99719 369 aaPredicted RBP15.19■□□□□ 0.02
TCOF1-202ENST00000377797 NIFKQ9BYG3 293 aaKnown RBP15.19■□□□□ 0.02
TCOF1-202ENST00000377797 KIF9Q9HAQ2 790 aa15.19■□□□□ 0.02
TCOF1-202ENST00000377797 GSTA1P08263 222 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 GSTA2P09210 222 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 MAPRE1Q15691 268 aaKnown RBP15.18■□□□□ 0.02
TCOF1-202ENST00000377797 LONRF1Q17RB8 773 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 PITPNM3Q9BZ71 974 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 GPATCH2LQ9NWQ4 482 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 GLI3P10071 1580 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 CDH16O75309 829 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 MX2P20592 715 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 ACAT1P24752 427 aaKnown RBP15.18■□□□□ 0.02
TCOF1-202ENST00000377797 ZNF112Q9UJU3 913 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 HMBSP08397 361 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 PAEPP09466 180 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 MCL1Q07820 350 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 LRIG3Q6UXM1 1119 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 ZNF662Q6ZS27 426 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 KRT35Q92764 455 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 NUDCD1Q96RS6 583 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 PAK5Q9P286 719 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 XPO7Q9UIA9 1087 aaKnown RBP15.18■□□□□ 0.02
TCOF1-202ENST00000377797 USP18Q9UMW8 372 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 C10orf71Q711Q0 1435 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 HSD17B3P37058 310 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 FMO1Q01740 532 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 HGSNATQ68CP4 663 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 FOXP3Q9BZS1 431 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 SMYD3Q9H7B4 428 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 SP110Q9HB58 689 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 PCDHB7Q9Y5E2 793 aa15.18■□□□□ 0.02
TCOF1-202ENST00000377797 KPNA7A9QM74 516 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 ARF4P18085 180 aaPredicted RBP15.17■□□□□ 0.02
TCOF1-202ENST00000377797 MAGEA4P43358 317 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 FAM131BQ86XD5 332 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 THOC1Q96FV9 657 aaKnown RBP15.17■□□□□ 0.02
TCOF1-202ENST00000377797 TJP2Q9UDY2 1190 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 GMNCA6NCL1 334 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 ATP9BO43861 1147 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 GAD1Q99259 594 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 CYTH2Q99418 400 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 APBA2Q99767 749 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 TTYH3Q9C0H2 523 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 PCDHA3Q9Y5H8 950 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 ZNF263O14978 683 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 XPAP23025 273 aaPredicted RBP15.17■□□□□ 0.02
TCOF1-202ENST00000377797 PMLP29590 882 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 ATN1P54259 1190 aaPredicted RBP15.17■□□□□ 0.02
TCOF1-202ENST00000377797 BST2Q10589 180 aaKnown RBP15.17■□□□□ 0.02
TCOF1-202ENST00000377797 SPOCD1Q6ZMY3 1216 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 MCUQ8NE86 351 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 LRRC15Q8TF66 581 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 L3MBTL3Q96JM7 780 aaPredicted RBP15.17■□□□□ 0.02
TCOF1-202ENST00000377797 KREMEN1Q96MU8 473 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 DDX43Q9NXZ2 648 aaKnown RBP15.17■□□□□ 0.02
TCOF1-202ENST00000377797 TOGARAM1Q9Y4F4 1720 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 CCDC88AQ3V6T2 1871 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 MICAL2O94851 1124 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 ZBTB48P10074 688 aaPredicted RBP15.17■□□□□ 0.02
TCOF1-202ENST00000377797 OTUD4Q01804 1114 aaKnown RBP15.17■□□□□ 0.02
TCOF1-202ENST00000377797 ZNF512Q96ME7 567 aaPredicted RBP15.17■□□□□ 0.02
TCOF1-202ENST00000377797 TRPV2Q9Y5S1 764 aa15.17■□□□□ 0.02
TCOF1-202ENST00000377797 PLA2G4AP47712 749 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 ZNF268Q14587 947 aaPredicted RBP15.16■□□□□ 0.02
TCOF1-202ENST00000377797 MDH1BQ5I0G3 518 aa15.16■□□□□ 0.02
TCOF1-202ENST00000377797 PDCD6IPQ8WUM4 868 aaKnown RBP15.16■□□□□ 0.02
TCOF1-202ENST00000377797 CHMP2BQ9UQN3 213 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms