RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 MUM1Q2TAK8 710 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 RGL4Q8IZJ4 473 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 PPWD1Q96BP3 646 aaKnown RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 FAM161BQ96MY7 647 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 MTMR9Q96QG7 549 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 CARD9Q9H257 536 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 GOLPH3Q9H4A6 298 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 CHST12Q9NRB3 414 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 INTS13Q9NVM9 706 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 PAK5Q9P286 719 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 ZMYND8Q9ULU4 1186 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 TADA3O75528 432 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 HSPA8P11142 646 aaKnown RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 PBLDP30039 288 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 PTPN11Q06124 597 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 ZNF177Q13360 481 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 TATDN1Q6P1N9 297 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 JAMLQ86YT9 394 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 PPHLN1Q8NEY8 458 aaKnown RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 SPATA18Q8TC71 538 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 UCMAQ8WVF2 138 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 TRIM54Q9BYV2 358 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 ZNF541Q9H0D2 1346 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 PCDH8O95206 1070 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 VSNL1P62760 191 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 MTHFD1LQ6UB35 978 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 COG1Q8WTW3 980 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 SLC35C1Q96A29 364 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 TPX2Q9ULW0 747 aaKnown RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 ADGRB2O60241 1585 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 M0QYT0 321 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 SMAPO00193 183 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 TXLNGQ9NUQ3 528 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 DSEQ9UL01 958 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 UBIAD1Q9Y5Z9 338 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 GTPBP10A4D1E9 387 aaKnown RBP12.09□□□□□ -0.47
SYNE1-204ENST00000367248 TLL1O43897 1013 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 PLEKP08567 350 aaPredicted RBP12.09□□□□□ -0.47
SYNE1-204ENST00000367248 ESRRAP11474 423 aaPredicted RBP12.09□□□□□ -0.47
SYNE1-204ENST00000367248 TBCCQ15814 346 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 MDH1BQ5I0G3 518 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 DLK2Q6UY11 383 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 ZNF410Q86VK4 478 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 C9orf72Q96LT7 481 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 PPARGC1AQ9UBK2 798 aaKnown RBP12.09□□□□□ -0.47
SYNE1-204ENST00000367248 ZC3H7BQ9UGR2 993 aaKnown RBP12.09□□□□□ -0.47
SYNE1-204ENST00000367248 SLC30A1Q9Y6M5 507 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 SLC12A8A0AV02 714 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 SLC11A2P49281 568 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 NDUFV1P49821 464 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 UGP2Q16851 508 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 PPM1LQ5SGD2 360 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 KIAA0895Q8NCT3 520 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 IPMKQ8NFU5 416 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 ELAC2Q9BQ52 826 aaKnown RBP12.09□□□□□ -0.47
SYNE1-204ENST00000367248 CISHQ9NSE2 258 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 PEX10O60683 326 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 BCAT1P54687 386 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 MEI1Q5TIA1 1274 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 GPR142Q7Z601 462 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 ANKMY2Q8IV38 441 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 EMILIN2Q9BXX0 1053 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 IPPQ9Y573 584 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 KIF1AQ12756 1690 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 TMEM247A6NEH6 219 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 EPB42P16452 691 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 MAP4K3Q8IVH8 894 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 BRSK2Q8IWQ3 736 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 ATP6V0D2Q8N8Y2 350 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 MS4A14Q96JA4 679 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 ZSWIM1Q9BR11 485 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 FOXP3Q9BZS1 431 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 SLC13A1Q9BZW2 595 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 DRC3Q9H069 523 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 MEIS2O14770 477 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 LHX1P48742 406 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 CENPCQ03188 943 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 FASTKD1Q53R41 847 aaKnown RBP12.09□□□□□ -0.47
SYNE1-204ENST00000367248 CES5AQ6NT32 575 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 KCNK18Q7Z418 384 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 MFN1Q8IWA4 741 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 NCLNQ969V3 563 aa12.09□□□□□ -0.47
SYNE1-204ENST00000367248 RBM12Q9NTZ6 932 aaKnown RBP12.09□□□□□ -0.47
SYNE1-204ENST00000367248 APOBEC2Q9Y235 224 aaKnown RBP12.09□□□□□ -0.47
SYNE1-204ENST00000367248 MAPK9P45984 424 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 CSGALNACT1Q8TDX6 532 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 KRT82Q9NSB4 513 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 PIK3CDO00329 1044 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 RNASEH1O60930 286 aaKnown RBP12.08□□□□□ -0.48
SYNE1-204ENST00000367248 EGFRP00533 1210 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 PPP3CCP48454 512 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 CCDC60Q8IWA6 550 aaPredicted RBP12.08□□□□□ -0.48
SYNE1-204ENST00000367248 CNPY4Q8N129 248 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 PPP1R36Q96LQ0 422 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 KANSL3Q9P2N6 904 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 PLA2G4CQ9UP65 541 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 PSMD10O75832 226 aa12.08□□□□□ -0.48
SYNE1-204ENST00000367248 FBXO21O94952 628 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms