RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 GMPSP49915 693 aaPredicted RBP13.11□□□□□ -0.31
SDC3-201ENST00000336798 GPRC5AQ8NFJ5 357 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 MTERF3Q96E29 417 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 MOV10L1Q9BXT6 1211 aaKnown RBP13.11□□□□□ -0.31
SDC3-201ENST00000336798 COPS7BQ9H9Q2 264 aaPredicted RBP13.11□□□□□ -0.31
SDC3-201ENST00000336798 C17orf102A2RUQ5 167 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 M0R3G1 203 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 TFE3P19532 575 aaPredicted RBP13.11□□□□□ -0.31
SDC3-201ENST00000336798 SLC18A3Q16572 532 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 ANKS6Q68DC2 871 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 TFB1MQ8WVM0 346 aaKnown RBP13.11□□□□□ -0.31
SDC3-201ENST00000336798 ZKSCAN4Q969J2 545 aaPredicted RBP13.11□□□□□ -0.31
SDC3-201ENST00000336798 TAAR1Q96RJ0 339 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 PRPF18Q99633 342 aaKnown RBP13.11□□□□□ -0.31
SDC3-201ENST00000336798 RNPEPQ9H4A4 650 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 DDIT4Q9NX09 232 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 DPP3Q9NY33 737 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 SCN3BQ9NY72 215 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 RUVBL2Q9Y230 463 aaKnown RBP13.11□□□□□ -0.31
SDC3-201ENST00000336798 N6AMT1Q9Y5N5 214 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 RAD51CO43502 376 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 GSTM1P09488 218 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 NUDT2P50583 147 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 MTFR1Q15390 333 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 MICU2Q8IYU8 434 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 DPF3Q92784 378 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 TARS2Q9BW92 718 aaKnown RBP13.11□□□□□ -0.31
SDC3-201ENST00000336798 OSBPL8Q9BZF1 889 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 AP3B1O00203 1094 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 TOMM70O94826 608 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 PAX7P23759 505 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 PCSK1P29120 753 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 TRIM65Q6PJ69 517 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 GPATCH2LQ9NWQ4 482 aa13.11□□□□□ -0.31
SDC3-201ENST00000336798 ADGRL3Q9HAR2 1447 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 TSC22D2O75157 780 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 VTNP04004 478 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 STOX1Q6ZVD7 989 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 DEFB128Q7Z7B8 93 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 SIX5Q8N196 739 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 FAM210AQ96ND0 272 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 WDR35Q9P2L0 1181 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 ITGB6P18564 788 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 ACO1P21399 889 aaKnown RBP13.1□□□□□ -0.31
SDC3-201ENST00000336798 KCNT1Q5JUK3 1230 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 CCT7Q99832 543 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 GID8Q9NWU2 228 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 STRNO43815 780 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 SUPT7LO94864 414 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 IL18RAPO95256 599 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 AGTP01019 485 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 SHROOM1Q2M3G4 852 aaPredicted RBP13.1□□□□□ -0.31
SDC3-201ENST00000336798 NOTUMQ6P988 496 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 APOL2Q9BQE5 337 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 NUDT12Q9BQG2 462 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 MANSC1Q9H8J5 431 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 CHST12Q9NRB3 414 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 KRT84Q9NSB2 600 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 RIC8BQ9NVN3 520 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 PAK5Q9P286 719 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 SMG5Q9UPR3 1016 aaKnown RBP13.1□□□□□ -0.31
SDC3-201ENST00000336798 ITIH2P19823 946 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 CPT1AP50416 773 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 SERPINB9P50453 376 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 PTK6Q13882 451 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 STILQ15468 1287 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 B3GALNT2Q8NCR0 500 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 CALML6Q8TD86 181 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 CAAP1Q9H8G2 361 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 RPS6KB2Q9UBS0 482 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 AP1G2O75843 785 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 FGFR1P11362 822 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 HPGDP15428 266 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 CAMK2GQ13555 558 aaPredicted RBP13.1□□□□□ -0.31
SDC3-201ENST00000336798 CYP51A1Q16850 503 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 DEPDC7Q96QD5 511 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 IMPAD1Q9NX62 359 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 ERAP1Q9NZ08 941 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 STMN3Q9NZ72 180 aa13.1□□□□□ -0.31
SDC3-201ENST00000336798 TMEM120BA0PK00 339 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 FEN1P39748 380 aaKnown RBP13.09□□□□□ -0.31
SDC3-201ENST00000336798 STK4Q13043 487 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 POLD3Q15054 466 aaPredicted RBP13.09□□□□□ -0.31
SDC3-201ENST00000336798 TCEA2Q15560 299 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 VPS37AQ8NEZ2 397 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 ATG4CQ96DT6 458 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 SPATA31A3Q5VYP0 1347 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 UBE2Q2LH0YL09 131 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 ODC1P11926 461 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 CNTN1Q12860 1018 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 SYDE1Q6ZW31 735 aaPredicted RBP13.09□□□□□ -0.31
SDC3-201ENST00000336798 ACOT1Q86TX2 421 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 MDM1Q8TC05 714 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 TADA1Q96BN2 335 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 TUBGCP3Q96CW5 907 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 GJD4Q96KN9 370 aaPredicted RBP13.09□□□□□ -0.31
SDC3-201ENST00000336798 EPN3Q9H201 632 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 NSMCE4AQ9NXX6 385 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 UVRAGQ9P2Y5 699 aa13.09□□□□□ -0.31
SDC3-201ENST00000336798 USP15Q9Y4E8 981 aaPredicted RBP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms