RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 SUSD3Q96L08 255 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 TMEM74Q96NL1 305 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 TRERF1Q96PN7 1200 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 TRMT61BQ9BVS5 477 aaKnown RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 LRTM1Q9HBL6 345 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 MCCC2Q9HCC0 563 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 HELLSQ9NRZ9 838 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 HDAC6Q9UBN7 1215 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 GPR98Q8WXG9 6306 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 HCFC1P51610 2035 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 C2CD3Q4AC94 2353 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 SPTBN5Q9NRC6 3674 aaKnown RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 IGHV1OR15-9A0A0B4J2B8 117 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CCDC196A0A1B0GTZ2 297 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 MTMR11A4FU01 709 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CASTOR2A6NHX0 329 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 N4BP3O15049 544 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 GJB6O95452 261 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 NFATC1O95644 943 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 GH2P01242 217 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 SRPRAP08240 638 aaKnown RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 MYOGP15173 224 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 ENGP17813 658 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 ACO1P21399 889 aaKnown RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 GPTP24298 496 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 HADHAP40939 763 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CDK8P49336 464 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CLCN2P51788 898 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 NOP14P78316 857 aaKnown RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CYP4F2P78329 520 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CREB5Q02930 508 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 E2F4Q16254 413 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 FBLN7Q53RD9 439 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 UBXN11Q5T124 520 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 ISM2Q6H9L7 571 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 PSAPL1Q6NUJ1 521 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 ZNF783Q6ZMS7 281 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 KIAA1211Q6ZU35 1233 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 UBE3BQ7Z3V4 1068 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 PCGF5Q86SE9 256 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 KBTBD6Q86V97 674 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 MFSD2AQ8NA29 543 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 PPHLN1Q8NEY8 458 aaKnown RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 LNX1Q8TBB1 728 aaPredicted RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CD101Q93033 1021 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 SUCLG2Q96I99 432 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 LMLNQ96KR4 655 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 DDX24Q9GZR7 859 aaKnown RBP eCLIP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 CCDC113Q9H0I3 377 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 SLITRK6Q9H5Y7 841 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 TRMT13Q9NUP7 481 aaKnown RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 KLHL11Q9NVR0 708 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 VPS51Q9UID3 782 aa1.76□□□□□ -2.13
LINC00643-201ENST00000334389 DBR1Q9UK59 544 aaKnown RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 HEMK1Q9Y5R4 338 aaPredicted RBP1.76□□□□□ -2.13
LINC00643-201ENST00000334389 TET1Q8NFU7 2136 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 ANO9A1A5B4 782 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 PALM3A6NDB9 673 aaPredicted RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 LAD1O00515 517 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 TLX2O43763 284 aaPredicted RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 CACNG3O60359 315 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 PGK1P00558 417 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 URODP06132 367 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 PDGFRBP09619 1106 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 SOX11P35716 441 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 ARFIP2P53365 341 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 FOLH1Q04609 750 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 GRM4Q14833 912 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 SLC14A2Q15849 920 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 UGT8Q16880 541 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 MMEL1Q495T6 779 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 PABPC1LQ4VXU2 614 aaKnown RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 ARHGAP15Q53QZ3 475 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 YOD1Q5VVQ6 348 aaPredicted RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 ZNF517Q6ZMY9 492 aaPredicted RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 USP43Q70EL4 1123 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 CATIPQ7Z7H3 387 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 MON1AQ86VX9 555 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 LMBR1Q8WVP7 490 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 ZFPM2Q8WW38 1151 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 ZNF516Q92618 1163 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 TATDN2Q93075 761 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 ADAM2Q99965 735 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 MENTQ9BUN1 341 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 GPR87Q9BY21 358 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 C2orf40Q9H1Z8 148 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 ANTXR1Q9H6X2 564 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 VRTNQ9H8Y1 702 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 ZFP14Q9HCL3 533 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 MAN1C1Q9NR34 630 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 FBXO8Q9NRD0 319 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 ANKEF1Q9NU02 776 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 CEP126Q9P2H0 1117 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 NFKBIL1Q9UBC1 381 aaPredicted RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 MTUS1Q9ULD2 1270 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 MTMR6Q9Y217 621 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 KLK4Q9Y5K2 254 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 C11orf97A0A1B0GVM6 126 aaPredicted RBP1.75□□□□□ -2.13
LINC00643-201ENST00000334389 H3BRB1 525 aa1.75□□□□□ -2.13
LINC00643-201ENST00000334389 MEIS1O00470 390 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms