RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 KLRC4O43908 158 aa20.9■□□□□ 0.94
LIME1-201ENST00000309546 EXOC3O60645 756 aa20.9■□□□□ 0.94
LIME1-201ENST00000309546 PDGFRBP09619 1106 aa20.9■□□□□ 0.94
LIME1-201ENST00000309546 LMO2P25791 158 aa20.9■□□□□ 0.94
LIME1-201ENST00000309546 KRT85P78386 507 aa20.9■□□□□ 0.94
LIME1-201ENST00000309546 KNOP1Q1ED39 458 aaKnown RBP20.9■□□□□ 0.94
LIME1-201ENST00000309546 ZNF528Q3MIS6 628 aa20.9■□□□□ 0.94
LIME1-201ENST00000309546 TXNDC8Q6A555 127 aa20.9■□□□□ 0.94
LIME1-201ENST00000309546 C4orf50Q6ZRC1 276 aa20.9■□□□□ 0.94
LIME1-201ENST00000309546 CMTM8Q8IZV2 173 aa20.9■□□□□ 0.94
LIME1-201ENST00000309546 ZNF687Q8N1G0 1237 aa20.9■□□□□ 0.94
LIME1-201ENST00000309546 CELF5Q8N6W0 485 aaKnown RBP20.9■□□□□ 0.94
LIME1-201ENST00000309546 MRPS31Q92665 395 aaKnown RBP20.9■□□□□ 0.94
LIME1-201ENST00000309546 MYLPFQ96A32 169 aa20.9■□□□□ 0.94
LIME1-201ENST00000309546 PAGE5Q96GU1 130 aa20.9■□□□□ 0.94
LIME1-201ENST00000309546 HINFPQ9BQA5 517 aa20.9■□□□□ 0.94
LIME1-201ENST00000309546 CHRDQ9H2X0 955 aa20.9■□□□□ 0.94
LIME1-201ENST00000309546 C8orf33Q9H7E9 229 aaPredicted RBP20.9■□□□□ 0.94
LIME1-201ENST00000309546 CGNQ9P2M7 1197 aaKnown RBP20.9■□□□□ 0.94
LIME1-201ENST00000309546 CDH9Q9ULB4 789 aa20.9■□□□□ 0.94
LIME1-201ENST00000309546 PTPRZ1P23471 2315 aaPredicted RBP20.9■□□□□ 0.94
LIME1-201ENST00000309546 PTPRDP23468 1912 aa20.9■□□□□ 0.94
LIME1-201ENST00000309546 GREB1Q4ZG55 1949 aa20.89■□□□□ 0.93
LIME1-201ENST00000309546 KINO60870 393 aaKnown RBP20.89■□□□□ 0.93
LIME1-201ENST00000309546 CST3P01034 146 aaPredicted RBP20.89■□□□□ 0.93
LIME1-201ENST00000309546 WARSP23381 471 aaKnown RBP20.89■□□□□ 0.93
LIME1-201ENST00000309546 DDX6P26196 483 aaKnown RBP eCLIP20.89■□□□□ 0.934e-8■■□□□ 14.4
LIME1-201ENST00000309546 WEE1P30291 646 aa20.89■□□□□ 0.93
LIME1-201ENST00000309546 TNNC1P63316 161 aa20.89■□□□□ 0.93
LIME1-201ENST00000309546 TNK2Q07912 1038 aa20.89■□□□□ 0.93
LIME1-201ENST00000309546 KMT5BQ4FZB7 885 aa20.89■□□□□ 0.93
LIME1-201ENST00000309546 CFAP221Q4G0U5 840 aa20.89■□□□□ 0.93
LIME1-201ENST00000309546 C12orf56Q8IXR9 622 aa20.89■□□□□ 0.93
LIME1-201ENST00000309546 KIAA0895Q8NCT3 520 aa20.89■□□□□ 0.93
LIME1-201ENST00000309546 MSANTD3Q96H12 275 aa20.89■□□□□ 0.93
LIME1-201ENST00000309546 FUBP3Q96I24 572 aaKnown RBP eCLIP20.89■□□□□ 0.93
LIME1-201ENST00000309546 SNX25Q9H3E2 840 aa20.89■□□□□ 0.93
LIME1-201ENST00000309546 TRPC7Q9HCX4 862 aa20.89■□□□□ 0.93
LIME1-201ENST00000309546 CRTAC1Q9NQ79 661 aa20.89■□□□□ 0.93
LIME1-201ENST00000309546 THG1LQ9NWX6 298 aaKnown RBP20.89■□□□□ 0.93
LIME1-201ENST00000309546 UXTQ9UBK9 157 aaPredicted RBP20.89■□□□□ 0.93
LIME1-201ENST00000309546 ZMYM5Q9UJ78 669 aa20.89■□□□□ 0.93
LIME1-201ENST00000309546 ZDHHC9Q9Y397 364 aa20.89■□□□□ 0.93
LIME1-201ENST00000309546 RIF1Q5UIP0 2472 aaKnown RBP20.88■□□□□ 0.93
LIME1-201ENST00000309546 SPECC1L-ADORA2AF8WAN1 911 aa20.88■□□□□ 0.93
LIME1-201ENST00000309546 PHACTR2O75167 634 aa20.88■□□□□ 0.93
LIME1-201ENST00000309546 NOL4O94818 638 aa20.88■□□□□ 0.93
LIME1-201ENST00000309546 CMA1P23946 247 aa20.88■□□□□ 0.93
LIME1-201ENST00000309546 CTHP32929 405 aa20.88■□□□□ 0.93
LIME1-201ENST00000309546 PLCB2Q00722 1185 aa20.88■□□□□ 0.93
LIME1-201ENST00000309546 CYP27A1Q02318 531 aa20.88■□□□□ 0.93
LIME1-201ENST00000309546 STK4Q13043 487 aa20.88■□□□□ 0.93
LIME1-201ENST00000309546 TRPC3Q13507 836 aa20.88■□□□□ 0.93
LIME1-201ENST00000309546 FAM171BQ6P995 826 aa20.88■□□□□ 0.93
LIME1-201ENST00000309546 C1orf228Q6PIY5 440 aa20.88■□□□□ 0.93
LIME1-201ENST00000309546 LIMS2Q7Z4I7 341 aa20.88■□□□□ 0.93
LIME1-201ENST00000309546 OR6B3Q8NGW1 331 aa20.88■□□□□ 0.93
LIME1-201ENST00000309546 GOLGA5Q8TBA6 731 aa20.88■□□□□ 0.93
LIME1-201ENST00000309546 MRPL45Q9BRJ2 306 aaKnown RBP20.88■□□□□ 0.93
LIME1-201ENST00000309546 PRMT8Q9NR22 394 aaPredicted RBP20.88■□□□□ 0.93
LIME1-201ENST00000309546 MAGEC2Q9UBF1 373 aaPredicted RBP20.88■□□□□ 0.93
LIME1-201ENST00000309546 CCL26Q9Y258 94 aa20.88■□□□□ 0.93
LIME1-201ENST00000309546 ANAPC1Q9H1A4 1944 aa20.87■□□□□ 0.93
LIME1-201ENST00000309546 TADA3O75528 432 aa20.87■□□□□ 0.93
LIME1-201ENST00000309546 CHRNB1P11230 501 aa20.87■□□□□ 0.93
LIME1-201ENST00000309546 BDNFP23560 247 aa20.87■□□□□ 0.93
LIME1-201ENST00000309546 CASP4P49662 377 aa20.87■□□□□ 0.93
LIME1-201ENST00000309546 MYL6P60660 151 aa20.87■□□□□ 0.93
LIME1-201ENST00000309546 BIRC3Q13489 604 aa20.87■□□□□ 0.93
LIME1-201ENST00000309546 MAPRE1Q15691 268 aaKnown RBP20.87■□□□□ 0.93
LIME1-201ENST00000309546 WDR72Q3MJ13 1102 aa20.87■□□□□ 0.93
LIME1-201ENST00000309546 TXNDC11Q6PKC3 985 aa20.87■□□□□ 0.93
LIME1-201ENST00000309546 RALGPS2Q86X27 583 aaPredicted RBP20.87■□□□□ 0.93
LIME1-201ENST00000309546 TTC16Q8NEE8 873 aa20.87■□□□□ 0.93
LIME1-201ENST00000309546 ATRIPQ8WXE1 791 aa20.87■□□□□ 0.93
LIME1-201ENST00000309546 ZNF516Q92618 1163 aa20.87■□□□□ 0.93
LIME1-201ENST00000309546 USP13Q92995 863 aaPredicted RBP20.87■□□□□ 0.93
LIME1-201ENST00000309546 TRMT2BQ96GJ1 504 aaKnown RBP20.87■□□□□ 0.93
LIME1-201ENST00000309546 RBM12Q9NTZ6 932 aaKnown RBP20.87■□□□□ 0.93
LIME1-201ENST00000309546 USP25Q9UHP3 1055 aa20.87■□□□□ 0.93
LIME1-201ENST00000309546 CFAP54Q96N23 3096 aa20.86■□□□□ 0.93
LIME1-201ENST00000309546 GNL1P36915 607 aaPredicted RBP20.86■□□□□ 0.93
LIME1-201ENST00000309546 GRIK1P39086 918 aa20.86■□□□□ 0.93
LIME1-201ENST00000309546 SYKP43405 635 aa20.86■□□□□ 0.93
LIME1-201ENST00000309546 MLLT6P55198 1093 aaPredicted RBP20.86■□□□□ 0.93
LIME1-201ENST00000309546 LRRC32Q14392 662 aa20.86■□□□□ 0.93
LIME1-201ENST00000309546 PON2Q15165 354 aa20.86■□□□□ 0.93
LIME1-201ENST00000309546 MDH1BQ5I0G3 518 aa20.86■□□□□ 0.93
LIME1-201ENST00000309546 MON1AQ86VX9 555 aa20.86■□□□□ 0.93
LIME1-201ENST00000309546 PLEKHO2Q8TD55 490 aa20.86■□□□□ 0.93
LIME1-201ENST00000309546 IER2Q9BTL4 223 aa20.86■□□□□ 0.93
LIME1-201ENST00000309546 GZF1Q9H116 711 aaPredicted RBP20.86■□□□□ 0.93
LIME1-201ENST00000309546 KIF9Q9HAQ2 790 aa20.86■□□□□ 0.93
LIME1-201ENST00000309546 TDP1Q9NUW8 608 aa20.86■□□□□ 0.93
LIME1-201ENST00000309546 ZSCAN32Q9NX65 697 aa20.86■□□□□ 0.93
LIME1-201ENST00000309546 NXF1Q9UBU9 619 aaKnown RBP20.86■□□□□ 0.93
LIME1-201ENST00000309546 PCDHGA2Q9Y5H1 932 aa20.86■□□□□ 0.93
LIME1-201ENST00000309546 ANXA13P27216 316 aa20.85■□□□□ 0.93
LIME1-201ENST00000309546 MAGEA11P43364 429 aa20.85■□□□□ 0.93
LIME1-201ENST00000309546 PSMD2Q13200 908 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms