RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	FSHR	P23945	695 aa		28.53	■■■□□ 2.16
VEGFA-231	ENST00000640499	CCR2	P41597	374 aa		28.53	■■■□□ 2.16
VEGFA-231	ENST00000640499	NOP14	P78316	857 aa	Known RBP	28.53	■■■□□ 2.16
VEGFA-231	ENST00000640499	CCDC40	Q4G0X9	1142 aa		28.53	■■■□□ 2.16
VEGFA-231	ENST00000640499	TRIM59	Q8IWR1	403 aa		28.53	■■■□□ 2.16
VEGFA-231	ENST00000640499	ZDHHC14	Q8IZN3	488 aa		28.53	■■■□□ 2.16
VEGFA-231	ENST00000640499	SPPL2B	Q8TCT7	592 aa		28.53	■■■□□ 2.16
VEGFA-231	ENST00000640499	SNX25	Q9H3E2	840 aa		28.53	■■■□□ 2.16
VEGFA-231	ENST00000640499	AVEN	Q9NQS1	362 aa	Predicted RBP	28.53	■■■□□ 2.16
VEGFA-231	ENST00000640499	RAB20	Q9NX57	234 aa		28.53	■■■□□ 2.16
VEGFA-231	ENST00000640499	TMEM63C	Q9P1W3	806 aa		28.53	■■■□□ 2.16
VEGFA-231	ENST00000640499	PCDHB5	Q9Y5E4	795 aa		28.53	■■■□□ 2.16
VEGFA-231	ENST00000640499	MYO10	Q9HD67	2058 aa		28.52	■■■□□ 2.16
VEGFA-231	ENST00000640499	CYP2F1	P24903	491 aa		28.52	■■■□□ 2.16
VEGFA-231	ENST00000640499	GPR15	P49685	360 aa		28.52	■■■□□ 2.16
VEGFA-231	ENST00000640499	NFE2	Q16621	373 aa	Predicted RBP	28.52	■■■□□ 2.16
VEGFA-231	ENST00000640499	MGAT5B	Q3V5L5	792 aa		28.52	■■■□□ 2.16
VEGFA-231	ENST00000640499	PABPC1L	Q4VXU2	614 aa	Known RBP	28.52	■■■□□ 2.16
VEGFA-231	ENST00000640499	PRSS36	Q5K4E3	855 aa		28.52	■■■□□ 2.16
VEGFA-231	ENST00000640499	TDRD5	Q8NAT2	981 aa	Known RBP	28.52	■■■□□ 2.16
VEGFA-231	ENST00000640499	FBXL13	Q8NEE6	735 aa		28.52	■■■□□ 2.16
VEGFA-231	ENST00000640499	CORO1B	Q9BR76	489 aa		28.52	■■■□□ 2.16
VEGFA-231	ENST00000640499	MOSPD3	O75425	235 aa		28.51	■■■□□ 2.15
VEGFA-231	ENST00000640499	FMO5	P49326	533 aa		28.51	■■■□□ 2.15
VEGFA-231	ENST00000640499	TUFM	P49411	452 aa	Known RBP	28.51	■■■□□ 2.15
VEGFA-231	ENST00000640499	EPHA5	P54756	1037 aa		28.51	■■■□□ 2.15
VEGFA-231	ENST00000640499	GET4	Q7L5D6	327 aa	Predicted RBP	28.51	■■■□□ 2.15
VEGFA-231	ENST00000640499	OTOP3	Q7RTS5	596 aa		28.51	■■■□□ 2.15
VEGFA-231	ENST00000640499	TMC8	Q8IU68	726 aa		28.51	■■■□□ 2.15
VEGFA-231	ENST00000640499	TATDN2	Q93075	761 aa		28.51	■■■□□ 2.15
VEGFA-231	ENST00000640499	TCEAL4	Q96EI5	215 aa		28.51	■■■□□ 2.15
VEGFA-231	ENST00000640499	SEPT5	Q99719	369 aa	Predicted RBP	28.51	■■■□□ 2.15
VEGFA-231	ENST00000640499	LIMD1	Q9UGP4	676 aa		28.51	■■■□□ 2.15
VEGFA-231	ENST00000640499	HMGXB4	Q9UGU5	601 aa		28.51	■■■□□ 2.15
VEGFA-231	ENST00000640499	PTPRD	P23468	1912 aa		28.51	■■■□□ 2.15
VEGFA-231	ENST00000640499	GNA14	O95837	355 aa		28.5	■■■□□ 2.15
VEGFA-231	ENST00000640499	PTPN1	P18031	435 aa	Known RBP	28.5	■■■□□ 2.15
VEGFA-231	ENST00000640499	ERCC5	P28715	1186 aa	Predicted RBP	28.5	■■■□□ 2.15
VEGFA-231	ENST00000640499	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	28.5	■■■□□ 2.15
VEGFA-231	ENST00000640499	MYCBPAP	Q8TBZ2	947 aa		28.5	■■■□□ 2.15
VEGFA-231	ENST00000640499	MYLPF	Q96A32	169 aa		28.5	■■■□□ 2.15
VEGFA-231	ENST00000640499	ZNF512	Q96ME7	567 aa	Predicted RBP	28.5	■■■□□ 2.15
VEGFA-231	ENST00000640499	EPS15L1	Q9UBC2	864 aa		28.5	■■■□□ 2.15
VEGFA-231	ENST00000640499	MUTYH	Q9UIF7	546 aa		28.5	■■■□□ 2.15
VEGFA-231	ENST00000640499		A8MXQ7	604 aa		28.49	■■■□□ 2.15
VEGFA-231	ENST00000640499	PMM2	O15305	246 aa		28.49	■■■□□ 2.15
VEGFA-231	ENST00000640499	ALDH1A3	P47895	512 aa		28.49	■■■□□ 2.15
VEGFA-231	ENST00000640499	CFAP221	Q4G0U5	840 aa		28.49	■■■□□ 2.15
VEGFA-231	ENST00000640499	CCDC183	Q5T5S1	534 aa		28.49	■■■□□ 2.15
VEGFA-231	ENST00000640499	GPR152	Q8TDT2	470 aa		28.49	■■■□□ 2.15
VEGFA-231	ENST00000640499	FGF13	Q92913	245 aa		28.49	■■■□□ 2.15
VEGFA-231	ENST00000640499	PCED1B	Q96HM7	432 aa		28.49	■■■□□ 2.15
VEGFA-231	ENST00000640499	NIF3L1	Q9GZT8	377 aa		28.49	■■■□□ 2.15
VEGFA-231	ENST00000640499	ZNF334	Q9HCZ1	680 aa	Predicted RBP	28.49	■■■□□ 2.15
VEGFA-231	ENST00000640499	ABCB6	Q9NP58	842 aa		28.49	■■■□□ 2.15
VEGFA-231	ENST00000640499	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	28.49	■■■□□ 2.15	4e-7	■■■■■ 28.5
VEGFA-231	ENST00000640499	TRIO	O75962	3097 aa		28.48	■■■□□ 2.15
VEGFA-231	ENST00000640499	LAMP2	P13473	410 aa		28.48	■■■□□ 2.15
VEGFA-231	ENST00000640499	P4HA1	P13674	534 aa		28.48	■■■□□ 2.15
VEGFA-231	ENST00000640499	GBP2	P32456	591 aa	Predicted RBP	28.48	■■■□□ 2.15
VEGFA-231	ENST00000640499	EPHB3	P54753	998 aa		28.48	■■■□□ 2.15
VEGFA-231	ENST00000640499	ORC1	Q13415	861 aa		28.48	■■■□□ 2.15
VEGFA-231	ENST00000640499	MDH1B	Q5I0G3	518 aa		28.48	■■■□□ 2.15
VEGFA-231	ENST00000640499	SDHAF4	Q5VUM1	108 aa		28.48	■■■□□ 2.15
VEGFA-231	ENST00000640499	STKLD1	Q8NE28	680 aa		28.48	■■■□□ 2.15
VEGFA-231	ENST00000640499	LMO3	Q8TAP4	145 aa		28.48	■■■□□ 2.15
VEGFA-231	ENST00000640499	WHAMM	Q8TF30	809 aa		28.48	■■■□□ 2.15
VEGFA-231	ENST00000640499	GIPC2	Q8TF65	315 aa		28.48	■■■□□ 2.15
VEGFA-231	ENST00000640499	PSMG2	Q969U7	264 aa		28.48	■■■□□ 2.15
VEGFA-231	ENST00000640499	TWNK	Q96RR1	684 aa		28.48	■■■□□ 2.15
VEGFA-231	ENST00000640499	B3GNT5	Q9BYG0	378 aa		28.48	■■■□□ 2.15
VEGFA-231	ENST00000640499	EPHX3	Q9H6B9	360 aa		28.48	■■■□□ 2.15
VEGFA-231	ENST00000640499	PI4K2B	G5E9Z4	385 aa		28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	CLSTN1	O94985	981 aa		28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	ASGR2	P07307	311 aa		28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	NDST1	P52848	882 aa		28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	INCA1	Q0VD86	236 aa		28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	KCNH2	Q12809	1159 aa		28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	PLD1	Q13393	1074 aa		28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	DDR2	Q16832	855 aa		28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	NPAS3	Q8IXF0	933 aa		28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	PLCD3	Q8N3E9	789 aa		28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	B3GALNT2	Q8NCR0	500 aa		28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	ST13P5	Q8NFI4	369 aa	Predicted RBP	28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	ING5	Q8WYH8	240 aa		28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	ACSF2	Q96CM8	615 aa	Predicted RBP	28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	FUBP3	Q96I24	572 aa	Known RBP eCLIP	28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	ARID3A	Q99856	593 aa		28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	CYP3A43	Q9HB55	503 aa		28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	TMEM30A	Q9NV96	361 aa		28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	CDH7	Q9ULB5	785 aa		28.47	■■■□□ 2.15
VEGFA-231	ENST00000640499	FGFR1OP	O95684	399 aa	Known RBP	28.46	■■■□□ 2.15
VEGFA-231	ENST00000640499	HMGA1	P17096	107 aa	Known RBP	28.46	■■■□□ 2.15
VEGFA-231	ENST00000640499	GJA1	P17302	382 aa		28.46	■■■□□ 2.15
VEGFA-231	ENST00000640499	CEBPB	P17676	345 aa		28.46	■■■□□ 2.15
VEGFA-231	ENST00000640499	CACNA2D1	P54289	1103 aa		28.46	■■■□□ 2.15
VEGFA-231	ENST00000640499	IQCE	Q6IPM2	695 aa		28.46	■■■□□ 2.15
VEGFA-231	ENST00000640499	PAQR9	Q6ZVX9	377 aa		28.46	■■■□□ 2.15
VEGFA-231	ENST00000640499	SPATA2L	Q8IUW3	424 aa	Predicted RBP	28.46	■■■□□ 2.15
VEGFA-231	ENST00000640499	CRYBG2	Q8N1P7	616 aa		28.46	■■■□□ 2.15

Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms