RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 SPPL2BQ8TCT7 592 aa20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 C2orf15Q8WU43 125 aaKnown RBP20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 SYT15Q9BQS2 421 aa20.85■□□□□ 0.93
SHKBP1-221ENST00000599833 SPDYE4A6NLX3 237 aa20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 STX10O60499 249 aa20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 GNA14O95837 355 aa20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 PDGFRBP09619 1106 aa20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 PCSK1P29120 753 aa20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 TSPY1Q01534 308 aa20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 INCA1Q0VD86 236 aa20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 DCP1BQ8IZD4 617 aaKnown RBP20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 WHAMMQ8TF30 809 aa20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 TATDN2Q93075 761 aa20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 RPGRIP1Q96KN7 1286 aa20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 CNOT6LQ96LI5 555 aaKnown RBP20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 TWNKQ96RR1 684 aa20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 MYADMQ96S97 322 aa20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 NIF3L1Q9GZT8 377 aa20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 TMEM30AQ9NV96 361 aa20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 USTQ9Y2C2 406 aa20.84■□□□□ 0.93
SHKBP1-221ENST00000599833 SP100P23497 879 aaPredicted RBP20.83■□□□□ 0.93
SHKBP1-221ENST00000599833 GPR15P49685 360 aa20.83■□□□□ 0.93
SHKBP1-221ENST00000599833 KLHL40Q2TBA0 621 aa20.83■□□□□ 0.93
SHKBP1-221ENST00000599833 CFAP221Q4G0U5 840 aa20.83■□□□□ 0.93
SHKBP1-221ENST00000599833 HS6ST3Q8IZP7 471 aa20.83■□□□□ 0.93
SHKBP1-221ENST00000599833 UBR7Q8N806 425 aa20.83■□□□□ 0.93
SHKBP1-221ENST00000599833 OR6B3Q8NGW1 331 aa20.83■□□□□ 0.93
SHKBP1-221ENST00000599833 ITFG1Q8TB96 612 aa20.83■□□□□ 0.93
SHKBP1-221ENST00000599833 MYLPFQ96A32 169 aa20.83■□□□□ 0.93
SHKBP1-221ENST00000599833 FAXDC2Q96IV6 333 aa20.83■□□□□ 0.93
SHKBP1-221ENST00000599833 ARID3AQ99856 593 aa20.83■□□□□ 0.93
SHKBP1-221ENST00000599833 FUCA2Q9BTY2 467 aa20.83■□□□□ 0.93
SHKBP1-221ENST00000599833 ABCB6Q9NP58 842 aa20.83■□□□□ 0.93
SHKBP1-221ENST00000599833 ABI2Q9NYB9 513 aaPredicted RBP20.83■□□□□ 0.93
SHKBP1-221ENST00000599833 PCDHB5Q9Y5E4 795 aa20.83■□□□□ 0.93
SHKBP1-221ENST00000599833 XYLBO75191 536 aa20.82■□□□□ 0.92
SHKBP1-221ENST00000599833 LRG1P02750 347 aa20.82■□□□□ 0.92
SHKBP1-221ENST00000599833 RHOP08100 348 aa20.82■□□□□ 0.92
SHKBP1-221ENST00000599833 CYP2F1P24903 491 aa20.82■□□□□ 0.92
SHKBP1-221ENST00000599833 KCNH2Q12809 1159 aa20.82■□□□□ 0.92
SHKBP1-221ENST00000599833 NFE2Q16621 373 aaPredicted RBP20.82■□□□□ 0.92
SHKBP1-221ENST00000599833 CAVIN1Q6NZI2 390 aaKnown RBP20.82■□□□□ 0.92
SHKBP1-221ENST00000599833 PAQR9Q6ZVX9 377 aa20.82■□□□□ 0.92
SHKBP1-221ENST00000599833 ZDHHC14Q8IZN3 488 aa20.82■□□□□ 0.92
SHKBP1-221ENST00000599833 MYCBPAPQ8TBZ2 947 aa20.82■□□□□ 0.92
SHKBP1-221ENST00000599833 PCED1BQ96HM7 432 aa20.82■□□□□ 0.92
SHKBP1-221ENST00000599833 FUBP3Q96I24 572 aaKnown RBP eCLIP20.82■□□□□ 0.92
SHKBP1-221ENST00000599833 SNX25Q9H3E2 840 aa20.82■□□□□ 0.92
SHKBP1-221ENST00000599833 THAP9Q9H5L6 903 aa20.82■□□□□ 0.92
SHKBP1-221ENST00000599833 PIDD1Q9HB75 910 aa20.82■□□□□ 0.92
SHKBP1-221ENST00000599833 ZNF334Q9HCZ1 680 aaPredicted RBP20.82■□□□□ 0.92
SHKBP1-221ENST00000599833 PATJQ8NI35 1801 aa20.81■□□□□ 0.92
SHKBP1-221ENST00000599833 PTPN1P18031 435 aaKnown RBP20.81■□□□□ 0.92
SHKBP1-221ENST00000599833 NDST1P52848 882 aa20.81■□□□□ 0.92
SHKBP1-221ENST00000599833 CACNA2D1P54289 1103 aa20.81■□□□□ 0.92
SHKBP1-221ENST00000599833 PABPC1LQ4VXU2 614 aaKnown RBP20.81■□□□□ 0.92
SHKBP1-221ENST00000599833 CRYBG2Q8N1P7 616 aa20.81■□□□□ 0.92
SHKBP1-221ENST00000599833 B3GALNT2Q8NCR0 500 aa20.81■□□□□ 0.92
SHKBP1-221ENST00000599833 ENOX1Q8TC92 643 aaKnown RBP20.81■□□□□ 0.92
SHKBP1-221ENST00000599833 PSMG2Q969U7 264 aa20.81■□□□□ 0.92
SHKBP1-221ENST00000599833 TCEAL4Q96EI5 215 aa20.81■□□□□ 0.92
SHKBP1-221ENST00000599833 HSD3B7Q9H2F3 369 aa20.81■□□□□ 0.92
SHKBP1-221ENST00000599833 CYP3A43Q9HB55 503 aa20.81■□□□□ 0.92
SHKBP1-221ENST00000599833 SAMSN1Q9NSI8 373 aaKnown RBP20.81■□□□□ 0.92
SHKBP1-221ENST00000599833 EPS15L1Q9UBC2 864 aa20.81■□□□□ 0.92
SHKBP1-221ENST00000599833 DACH1Q9UI36 760 aa20.81■□□□□ 0.92
SHKBP1-221ENST00000599833 ZNF638Q14966 1978 aaKnown RBP20.81■□□□□ 0.92
SHKBP1-221ENST00000599833 A8MXQ7 604 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 P4HA2O15460 535 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 CILPO75339 1184 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 FGFR1OPO95684 399 aaKnown RBP20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 AFPP02771 609 aaKnown RBP20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 CCDC192P0DO97 292 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 HMGA1P17096 107 aaKnown RBP20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 PTPN2P17706 415 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 MAGEA11P43364 429 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 TUFMP49411 452 aaKnown RBP20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 ORC1Q13415 861 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 NCAPHQ15003 741 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 MGAT5BQ3V5L5 792 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 MDH1BQ5I0G3 518 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 MIIPQ5JXC2 388 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 CDKAL1Q5VV42 579 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 UNC93AQ86WB7 457 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 RNF135Q8IUD6 432 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 STKLD1Q8NE28 680 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 SEPT5Q99719 369 aaPredicted RBP20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 B3GNT5Q9BYG0 378 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 ELOVL4Q9GZR5 314 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 IL21Q9HBE4 155 aa20.8■□□□□ 0.92
SHKBP1-221ENST00000599833 ANAPC1Q9H1A4 1944 aa20.79■□□□□ 0.92
SHKBP1-221ENST00000599833 P4HA1P13674 534 aa20.79■□□□□ 0.92
SHKBP1-221ENST00000599833 CEBPBP17676 345 aa20.79■□□□□ 0.92
SHKBP1-221ENST00000599833 FSHRP23945 695 aa20.79■□□□□ 0.92
SHKBP1-221ENST00000599833 TYRO3Q06418 890 aa20.79■□□□□ 0.92
SHKBP1-221ENST00000599833 PLD1Q13393 1074 aa20.79■□□□□ 0.92
SHKBP1-221ENST00000599833 STX1AQ16623 288 aa20.79■□□□□ 0.92
SHKBP1-221ENST00000599833 SDHAF4Q5VUM1 108 aa20.79■□□□□ 0.92
SHKBP1-221ENST00000599833 DPY19L2P1Q6NXN4 242 aa20.79■□□□□ 0.92
SHKBP1-221ENST00000599833 GET4Q7L5D6 327 aaPredicted RBP20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms